View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13673_low_4 (Length: 237)
Name: NF13673_low_4
Description: NF13673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13673_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 52168153 - 52167971
Alignment:
| Q |
21 |
aaaattgtcaaatcatgtggaatacaggcgtgcaccaatgagtgataggtgaaatccatcgcaattactcagattataaaagc-aaaatcattcatttct |
119 |
Q |
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| T |
52168153 |
aaaattgtcaaatcatgtggaatacaggcgtccaccaatgagtgataggggaaatccatcgcaattactcagattataaaagcaaaaatcattcatttct |
52168054 |
T |
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| Q |
120 |
agtctgaga---tattatttgaggatcatataatttaataatatatggtctattacattcctttttggtcctaatcataaaaacaa |
202 |
Q |
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| T |
52168053 |
agtctgagatattattattagatgatcatataatt---taatatatggtctattacattcctttttggtcctaatcataaaaacaa |
52167971 |
T |
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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 19328386 - 19328220
Alignment:
| Q |
24 |
attgtcaaatcatgtggaatacaggcgtgcaccaatgagtgataggtgaaatccatcgcaattactcagattataaaagcaaaatcattcatttctagtc |
123 |
Q |
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| T |
19328386 |
attgtcaaatcatgtgcaatagag-cgtgtaccaatgagtgatagggggaatccatcgcaattactcgaatgataaaagcaaaatcatttctttctggtc |
19328288 |
T |
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| Q |
124 |
tgagatattatttgaggatcatataatttaataatatatggtctattacattcctttttggtcctaatcat |
194 |
Q |
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| T |
19328287 |
tgagatattattagaggattatataattt---aatatatggtatattacactcctttttggccttaatcat |
19328220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 19328137 - 19328047
Alignment:
| Q |
79 |
tcgcaattactcagattataaaagcaaaatcattcatttctagtctgagatattatttgaggatcatataatttaataatatatggtctattac |
172 |
Q |
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| T |
19328137 |
tcgcaattacttagatgataaaagcaaaatcattcctttctggtctgagatattattagaggatcatttaatt---taatatatggtctattac |
19328047 |
T |
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