View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13673_low_6 (Length: 236)
Name: NF13673_low_6
Description: NF13673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13673_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48592317 - 48592098
Alignment:
| Q |
1 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592317 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
48592218 |
T |
|
| Q |
101 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592217 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
48592118 |
T |
|
| Q |
201 |
ggcgaaaggcctgatgaatg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48592117 |
ggcgaaaggcctgatgaatg |
48592098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48602012 - 48601793
Alignment:
| Q |
1 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602012 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
48601913 |
T |
|
| Q |
101 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601912 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
48601813 |
T |
|
| Q |
201 |
ggcgaaaggcctgatgaatg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48601812 |
ggcgaaaggcctgatgaatg |
48601793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 23232015 - 23232233
Alignment:
| Q |
1 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232015 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
23232114 |
T |
|
| Q |
101 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||| |||||| | || ||||||| |
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| T |
23232115 |
gtcttgagaaactctttggcgagtgatggagtgttaacaactataaatcgagcagagccaagtcgaagggatataagaggtccatatcgctcagagaggt |
23232214 |
T |
|
| Q |
201 |
ggcgaaaggcctgatgaat |
219 |
Q |
| |
|
||| ||||| |||||||| |
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|
| T |
23232215 |
cgcggaaggcatgatgaat |
23232233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 23224682 - 23224899
Alignment:
| Q |
1 |
ccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgt |
100 |
Q |
| |
|
|||||| | ||||||||| || ||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||||||| ||||||| ||||| | | |
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|
| T |
23224682 |
ccaatatgccccataaggggcaaaagcaaaagtagcatcatcgtagacaactgtgttgatggcaatgttcattttacgggaagaataaacaagctcgttt |
23224781 |
T |
|
| Q |
101 |
gtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggt |
200 |
Q |
| |
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|| |||||||||||||| ||||||||||| | |||||| ||||||| || || ||||||||||||||||| | || |||||| |||| ||||||| |
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| T |
23224782 |
gttttgagaaactcttttgcgagtgatggggaactaacaacgataaatggaacagaaccaagtcgaagggatataaggggtccatatcgatcagagaggt |
23224881 |
T |
|
| Q |
201 |
ggcgaaaggcctgatgaa |
218 |
Q |
| |
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||||||||| ||||||| |
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|
| T |
23224882 |
cgcgaaaggcttgatgaa |
23224899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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