View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13674_high_1 (Length: 478)
Name: NF13674_high_1
Description: NF13674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13674_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 34899521 - 34899975
Alignment:
| Q |
9 |
aaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctta |
108 |
Q |
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| T |
34899521 |
aaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctta |
34899620 |
T |
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| Q |
109 |
gttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgaggagg-agcacagaagcatatgcaaatgttataataagatag |
207 |
Q |
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| T |
34899621 |
gttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaagtaccacacaagcatatgcaaatgttataataagatag |
34899720 |
T |
|
| Q |
208 |
gcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgaga |
307 |
Q |
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| T |
34899721 |
gcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgaga |
34899820 |
T |
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| Q |
308 |
atggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagag |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899821 |
atggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagag |
34899920 |
T |
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| Q |
408 |
atgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
462 |
Q |
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| T |
34899921 |
atgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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