View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13674_high_5 (Length: 304)
Name: NF13674_high_5
Description: NF13674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13674_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 72 - 304
Target Start/End: Complemental strand, 6382791 - 6382559
Alignment:
| Q |
72 |
acttaatatcaagatattctaaaaaatttcatatattctaacagttatgatcaaagtgcagaactaaaatttggtgagataaaaatgagggcagtaacaa |
171 |
Q |
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| T |
6382791 |
acttaatatcaagatattctaaaaaatttcatatattctaacagttatgatcaaagtgcagaactaaaatttggtgagataaaaatgagggcagtaacaa |
6382692 |
T |
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| Q |
172 |
actaacatttataatctgttaaaatgcaggaggtaaacatccttttctattagacaaaactgctagtagaatgtcagctaaaaatgctgatattgcaaat |
271 |
Q |
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| T |
6382691 |
actaacatttataatctgttaaaatgcaggaggtaaacatccttttctattagacaaaactgctagtagaatgtcagctaaaaatgctgatattgcaaat |
6382592 |
T |
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| Q |
272 |
gtaaatatttcacagtatcacattttcagtata |
304 |
Q |
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| T |
6382591 |
gtaaatatttcacagtatcacattttcagtata |
6382559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 6382924 - 6382791
Alignment:
| Q |
17 |
tctaagatattgcaagatatgaaattaatcctttgagataaactaaggtattctaacttaatatcaagatattctaaaaaatttcatatattctaacagt |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6382924 |
tctaagatattgcaagatatgaaattaatcctgtgagataaactaaggtattctaacttaatatcaagatattctaaaaaatttcatatattctaacagt |
6382825 |
T |
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| Q |
117 |
tatgatcaaagtgcagaactaaaatttggtgaga |
150 |
Q |
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| T |
6382824 |
tatgatcaaagtgcagaactaaaatttggtgaga |
6382791 |
T |
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