View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13675_high_10 (Length: 403)

Name: NF13675_high_10
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13675_high_10
NF13675_high_10
[»] chr5 (23 HSPs)
chr5 (1-374)||(28080552-28080925)
chr5 (190-374)||(28080804-28080988)
chr5 (194-348)||(28080871-28081025)
chr5 (290-348)||(27930000-27930058)
chr5 (290-348)||(27930408-27930466)
chr5 (290-348)||(27930612-27930670)
chr5 (290-348)||(28081171-28081229)
chr5 (290-348)||(28081375-28081433)
chr5 (290-348)||(28081579-28081637)
chr5 (290-348)||(28081783-28081841)
chr5 (290-348)||(27930816-27930874)
chr5 (285-339)||(27931029-27931083)
chr5 (222-281)||(27931024-27931083)
chr5 (227-285)||(27930000-27930058)
chr5 (227-285)||(27930204-27930262)
chr5 (227-285)||(27930408-27930466)
chr5 (227-285)||(27930612-27930670)
chr5 (227-285)||(28081171-28081229)
chr5 (227-285)||(28081375-28081433)
chr5 (227-285)||(28081579-28081637)
chr5 (227-285)||(28081783-28081841)
chr5 (290-348)||(27930204-27930262)
chr5 (227-285)||(27930816-27930874)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 28080552 - 28080925
Alignment:
Q  1 atcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattcttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080552 atcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattcttgttg 28080651  T
Q  101 ccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacgatcgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080652 ccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacgatcgct 28080751  T
Q  201 ggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaa 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080752 ggtcaaaagatcggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaa 28080851  T
Q  301 atgattagatgatgataatgatcgctggtcaaaagattgacgatgtcttgaactgttgaacaaatgattagatg 374  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28080852 atgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatg 28080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 190 - 374
Target Start/End: Original strand, 28080804 - 28080988
Alignment:
Q  190 taacgatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaa 289  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||    
T  28080804 taacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaa 28080903  T
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtcttgaactgttgaacaaatgattagatg 374  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28080904 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatg 28080988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 28080871 - 28081025
Alignment:
Q  194 gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgt 293  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||||||    
T  28080871 gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgt 28080970  T
Q  294 tgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  28080971 tgaacaaatgattagatgatgataatgatcgcagttcaaaagattggcaatgtct 28081025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct 27930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 27931083 - 27931029
Alignment:
Q  285 ttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 339  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattg 27931029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 27931083 - 27931024
Alignment:
Q  222 ttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaat 281  Q
    |||||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattggcaat 27931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    |||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct 27930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
Q  290 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 348  Q
    |||| ||| |||| ||||||||||||||||||| |||||||||||||||| | ||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct 27930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
Q  227 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 285  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| ||| ||||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct 27930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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