View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_12 (Length: 378)
Name: NF13675_high_12
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 3214965 - 3215311
Alignment:
| Q |
1 |
aagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaaca |
100 |
Q |
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| T |
3214965 |
aagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaaca |
3215064 |
T |
|
| Q |
101 |
gagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215065 |
gagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataa |
3215164 |
T |
|
| Q |
201 |
gattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgct |
300 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
3215165 |
gattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagcatttgct |
3215263 |
T |
|
| Q |
301 |
tttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
348 |
Q |
| |
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| T |
3215264 |
tttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 32460486 - 32460826
Alignment:
| Q |
8 |
ttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataa |
107 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || |||||| ||||| || || |||||||| || || | |
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| T |
32460486 |
ttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgctttcaacaactgaaatca |
32460585 |
T |
|
| Q |
108 |
ctggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagattgtctataagattgc |
206 |
Q |
| |
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|||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | |||||||||| || || | ||||| |
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| T |
32460586 |
ctggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagattatcaattaaattgc |
32460685 |
T |
|
| Q |
207 |
gagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaa |
306 |
Q |
| |
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|| | |||| |||| ||| ||||||||||||||||||| || |||| |||| ||||||||| | || |||||||||||| |||||||||| |||| |
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| T |
32460686 |
gaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcacgcatctgcttgtgaa |
32460784 |
T |
|
| Q |
307 |
aataggtcacaagtttgttctagagtttatacgcatgcgaag |
348 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| |
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| T |
32460785 |
aataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
11 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
110 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
111 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
210 |
Q |
| |
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||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || || || ||||| || | ||||| ||| | |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
|
| Q |
211 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
310 |
Q |
| |
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||||| ||||| || ||||||||| |||| ||| || |||| |||| |||||||| || |||| | ||||| ||| ||||||| || |||||||| |
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| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
|
| Q |
311 |
ggtcacaagtttgttctagagtttatacgcatg |
343 |
Q |
| |
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| ||||||||| | | | |||| ||||||||| |
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| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
11 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
84 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
11 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
110 |
Q |
| |
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|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
111 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
167 |
Q |
| |
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||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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