View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13675_high_14 (Length: 352)

Name: NF13675_high_14
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13675_high_14
NF13675_high_14
[»] chr5 (6 HSPs)
chr5 (1-342)||(22860549-22860891)
chr5 (197-339)||(28297695-28297824)
chr5 (234-342)||(31679223-31679331)
chr5 (147-201)||(38472250-38472304)
chr5 (219-251)||(38472188-38472220)
chr5 (287-342)||(38472119-38472174)
[»] chr4 (6 HSPs)
chr4 (143-342)||(25243341-25243539)
chr4 (154-249)||(31954768-31954863)
chr4 (148-249)||(24826619-24826720)
chr4 (148-340)||(40137756-40137945)
chr4 (274-338)||(23935486-23935548)
chr4 (148-184)||(24557104-24557140)
[»] chr6 (1 HSPs)
chr6 (148-342)||(16990190-16990384)
[»] chr2 (7 HSPs)
chr2 (148-342)||(45109481-45109675)
chr2 (148-342)||(13968838-13969032)
chr2 (157-342)||(45107771-45107956)
chr2 (154-249)||(37349767-37349862)
chr2 (154-249)||(4108911-4109006)
chr2 (191-341)||(5169334-5169483)
chr2 (148-229)||(19038249-19038331)
[»] chr3 (8 HSPs)
chr3 (155-341)||(20127596-20127781)
chr3 (148-249)||(17441755-17441856)
chr3 (146-342)||(14486368-14486563)
chr3 (154-249)||(17472000-17472095)
chr3 (155-342)||(25407282-25407469)
chr3 (148-229)||(8820460-8820541)
chr3 (148-229)||(20000658-20000740)
chr3 (154-211)||(23459305-23459362)
[»] chr1 (5 HSPs)
chr1 (148-339)||(7351735-7351925)
chr1 (148-229)||(3400576-3400658)
chr1 (146-225)||(11801376-11801455)
chr1 (158-227)||(42606646-42606714)
chr1 (148-200)||(13117385-13117437)
[»] chr7 (6 HSPs)
chr7 (146-249)||(17835085-17835187)
chr7 (148-249)||(25248880-25248981)
chr7 (148-342)||(12611862-12612054)
chr7 (148-342)||(12599187-12599379)
chr7 (148-205)||(23792797-23792854)
chr7 (299-339)||(17834996-17835036)
[»] chr8 (2 HSPs)
chr8 (35-147)||(39290430-39290542)
chr8 (148-227)||(38809600-38809680)
[»] scaffold0227 (1 HSPs)
scaffold0227 (299-342)||(20602-20645)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 22860891 - 22860549
Alignment:
Q  1 actaaaaacacatttaacccttaccgtaaatgaggtcagacttaatataccaaaatcgaaac-gcttaaaagtaatagacaatagtgaactatcatttag 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||  |||||||  |||||||||||||||||||||||||||     
T  22860891 actaaaaacacatttaacccttaccgtaaatgaagtcagacttaatatacaaaaatctaaaatgcttaaatttaatagacaatagtgaactatcatttac 22860792  T
Q  100 cgctccatatttctacatcttcaagcagcttctggtaaatagaagtagtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaa 199  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  22860791 tgctccatatttctacatcttcaagcagcttctggtaagtagaagtagtgttcacgtatgtaaacataagttaattacaacaggtgagctgcttagtgaa 22860692  T
Q  200 acgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttc 299  Q
    |||||||| |||||||||||| |||||||||| |||||||||||| |||| | || ||||| |||||||||| ||||||||||||||||||||||||  |    
T  22860691 acgtcctacgtggagtctcaaaagcactcttacgaagtaaatgaacaatacattgttttcactgttttgaatctgtcccatcaaacatctaagtgtcccc 22860592  T
Q  300 cttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  22860591 cttttatagtcctcaaagtgttggtttaatgggtctttctctg 22860549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 339
Target Start/End: Original strand, 28297695 - 28297824
Alignment:
Q  197 gaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtc 296  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||  ||||             ||||| ||||||||||||||||||    
T  28297695 gaaacgtcttaggtggagtcttaagagcactcttaagaagtaaatgaataatacactcttttc-------------tgtccaatcaaacatctaagtgtc 28297781  T
Q  297 ttccttttatagtcctcaaagtgttagtttaatgggtctttct 339  Q
      ||||||||| || |||| ||||| |||||||||||||||||    
T  28297782 ccccttttataatcttcaatgtgttggtttaatgggtctttct 28297824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 342
Target Start/End: Complemental strand, 31679331 - 31679223
Alignment:
Q  234 aagtaaatgaataatatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggt 333  Q
    |||||||| || |||| | || ||||||||| | |||||||| ||||||||| ||||||||||  |||||||||  | |||||||||| |||||||| ||    
T  31679331 aagtaaataaagaatacattgttttcattgtctagaatatgttccatcaaacttctaagtgtcccccttttataaccatcaaagtgttggtttaatgagt 31679232  T
Q  334 ctttctctg 342  Q
    |||||||||    
T  31679231 ctttctctg 31679223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 38472304 - 38472250
Alignment:
Q  147 gtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaac 201  Q
    |||||| |||||||||||| |||||||||||||||| |||||| |||||||||||    
T  38472304 gtgttcacgtatgtaaacacaagttaattacaacagatgagctgctcagtgaaac 38472250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 38472220 - 38472188
Alignment:
Q  219 aagagcactcttaagaagtaaatgaataatata 251  Q
    |||||||||||||||||||||||||||||||||    
T  38472220 aagagcactcttaagaagtaaatgaataatata 38472188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 38472174 - 38472119
Alignment:
Q  287 tctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||||||||||  ||||||||||||||| ||||||| |||||||||| |||| ||||    
T  38472174 tctaagtgtcccccttttatagtcctcgaagtgttggtttaatgggcctttatctg 38472119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 143 - 342
Target Start/End: Complemental strand, 25243539 - 25243341
Alignment:
Q  143 agtagtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatg 242  Q
    |||| ||||| |||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  25243539 agtattgttcacgtatgtaaacacaaattaattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactctcaagaagtaaatg 25243440  T
Q  243 aataatatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||||||| |||| ||| | | | | |||| |||||| |||||||| ||||||||  |||||||||||| |||||||||| |||||||||| |||||||||    
T  25243439 aataatacactgtttttactatctggaatttgtcccctcaaacat-taagtgtcccccttttatagtcatcaaagtgttggtttaatgggcctttctctg 25243341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31954863 - 31954768
Alignment:
Q  154 cgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataata 249  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  || |||||||||||||||    
T  31954863 cgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcaagagcactctacaggagtaaatgaataata 31954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 24826720 - 24826619
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||  ||||||||||||||||    
T  24826720 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcaatgaaacatcctaggtggagtctcaagatcactctacagaagtaaatgaataa 24826621  T
Q  248 ta 249  Q
    ||    
T  24826620 ta 24826619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 40137945 - 40137756
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| ||||||||||||  |||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  40137945 tgttcacgtatgtaaaca--agttaattacaacaggtgagctgcttagtgaaacatcctaggtggagtctcaagagaactcttcagaagtaaatgaataa 40137848  T
Q  248 tatactg-atttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctc 340  Q
    || | ||  ||||| | ||| |||| |||||||||  |||| | |   ||  |||||||||| |||||||||||| | |||||||| |||||||    
T  40137847 tacaatgtttttcactctttggaatctgtcccatc--acatatgaacttcccccttttatagccctcaaagtgttggcttaatgggcctttctc 40137756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 23935486 - 23935548
Alignment:
Q  274 gtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttc 338  Q
    |||||||||||  ||||||||||| | ||||||||||||||||||||| |||| ||||| |||||    
T  23935486 gtcccatcaaa--tctaagtgtctccgttttatagtcctcaaagtgttggtttgatgggcctttc 23935548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 24557140 - 24557104
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggt 184  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  24557140 tgttcacgtatgtaaacataagttaattacaaaaggt 24557104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 16990190 - 16990384
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    |||||||||||||||||| |||| |||||| ||||||||||| ||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  16990190 tgttcgcgtatgtaaacacaagtcaattactacaggtgagctgctatgtgaaacatcttaggtggagtctcaagagcactcttaagaagtaaatgaataa 16990289  T
Q  248 tatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    || ||   ||||  | | | |||| |||||||||||||||| ||||||   ||||||||||||||||||||||| |||||||||| |||||||||    
T  16990290 tacaccattttcgatatatggaatctgtcccatcaaacatccaagtgttccccttttatagtcctcaaagtgttggtttaatgggcctttctctg 16990384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 45109481 - 45109675
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45109481 tgttcacgtatgtaaacacaagataattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 45109580  T
Q  248 tatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    || | || |||||   ||| |||| | | |  ||||||||||||| |||  ||||| |||||| |||||||||| |||||||||| |||||||||    
T  45109581 tacattgttttcaccatttggaatctcttctctcaaacatctaagagtccccctttaatagtcatcaaagtgttggtttaatgggcctttctctg 45109675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 148 - 342
Target Start/End: Complemental strand, 13969032 - 13968838
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||||||||||||||| ||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||| |||||||    
T  13969032 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcaatgaaacgtcttaggaggagtctcaagagcactcttaagaaataactgaataa 13968933  T
Q  248 tatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    || |||  ||||| | | | |||| |||||||||||||||  ||||||   ||||||||||||||||| ||||| ||||||||||||||| ||||    
T  13968932 tacactattttcactatctggaatctgtcccatcaaacattcaagtgttccccttttatagtcctcaaggtgttggtttaatgggtctttttctg 13968838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 342
Target Start/End: Original strand, 45107771 - 45107956
Alignment:
Q  157 atgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatactgat 256  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | || |    
T  45107771 atgtaaacacaagataattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactattaagaagtaaatgaataatacattgtt 45107870  T
Q  257 ttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||||   | | |||| | | |  |||||||||||||||||  ||||| |||||| |||||||||| |||||||||| |||||||||    
T  45107871 ttcaccatctggaatctcttctctcaaacatctaagtgtccccctttaatagtcatcaaagtgttggtttaatgggcctttctctg 45107956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 37349862 - 37349767
Alignment:
Q  154 cgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataata 249  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37349862 cgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcaagagcactcttcagaagtaaatgaataata 37349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 4108911 - 4109006
Alignment:
Q  154 cgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataata 249  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||    
T  4108911 cgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtccaaggtggagtctcaagagcactctacagaagtaactgaataata 4109006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 341
Target Start/End: Complemental strand, 5169483 - 5169334
Alignment:
Q  191 ctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatactgatttcattgttttgaatatgtcccatcaaacatcta 290  Q
    |||||||||| ||| |  ||||||| ||||||||||||| || || |||||||| |  | | || ||||  ||||||||||||||||||||||||| ||     
T  5169483 ctcagtgaaatgtcatgagtggagtttcaagagcactct-aataaataaatgaagagcacattgttttctctgttttgaatatgtcccatcaaacaactt 5169385  T
Q  291 agtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctct 341  Q
    ||||||  |||||||||  | |||||||||| | |||||||||||||||||    
T  5169384 agtgtcccccttttataaccatcaaagtgttcgcttaatgggtctttctct 5169334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 19038249 - 19038331
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaatt-acaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactct 229  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||| ||||| |||||||||||| |  ||||||||||||    
T  19038249 tgttcacgtatgtaaacacaagttaatttacaacaggtgagctgctcaatgaaatgtcctaggtggaattccaagagcactct 19038331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 20127596 - 20127781
Alignment:
Q  155 gtatgtaaacataagtt-aattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatact 253  Q
    ||||||||||| ||||| ||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| | |    
T  20127596 gtatgtaaacacaagtttaattacaacagatgagctgctcagtgaaacatcataggtggagtctcaagagcactcttaagaaataaatgaataatacatt 20127695  T
Q  254 gatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctct 341  Q
    | ||||| | | | |||| |||||||||   ||||||| ||||  |||||||||| |||||||||||||| |||||||| ||||||||    
T  20127696 gttttcactatctagaatttgtcccatc--ccatctaaatgtcccccttttatagccctcaaagtgttagcttaatgggcctttctct 20127781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 17441856 - 17441755
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  17441856 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcgagagcactcttcagaagtaaatgaataa 17441757  T
Q  248 ta 249  Q
    ||    
T  17441756 ta 17441755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 342
Target Start/End: Original strand, 14486368 - 14486563
Alignment:
Q  146 agtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaat 245  Q
    |||||||  |||||||||||||||||||||||||||| ||||||  ||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||    
T  14486368 agtgttcatgtatgtaaacataagttaattacaacagatgagctgttcagtgaaatgttttaggtggagtctcaagagcactcttcagaagtaaatgaat 14486467  T
Q  246 aatatactg-atttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    |||||||||  |||||   | | |||| ||||||||  || ||||||   ||  |||||||||| |||||||||||| | |||||||| |||||||||    
T  14486468 aatatactgtttttcaccatctggaatctgtcccat--aagatctaaacttcccccttttatagccctcaaagtgttggcttaatgggcctttctctg 14486563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 17472095 - 17472000
Alignment:
Q  154 cgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataata 249  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  17472095 cgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacatcctacgtggagtctcgagagcactcttcagaagtaaatgaataata 17472000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 342
Target Start/End: Original strand, 25407282 - 25407469
Alignment:
Q  155 gtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataatatactg 254  Q
    ||||||||||| || |||||||||| ||||| | |  | ||||||||||  ||| |||||| ||||||||| | |||| |||||||| || || | | ||    
T  25407282 gtatgtaaacacaaattaattacaataggtgtgttgttaagtgaaacgttttagctggagtttcaagagcattgttaaaaagtaaataaagaaaacattg 25407381  T
Q  255 atttcattg-ttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
     |||||||| ||||  ||||||| ||||||| |||||||||||  |||||||||| | ||||||| || ||||||| || |||||||||    
T  25407382 ttttcattgttttttgatatgtctcatcaaatatctaagtgtc-cccttttatagccatcaaagtattggtttaatcggcctttctctg 25407469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 8820460 - 8820541
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactct 229  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| ||||||  || |||||| ||| | |  ||||||||||||    
T  8820460 tgttcacgtatgaaaacacaagttaattacaacaggtgagctgctcagtagaatgtcctatgtgaaattccaagagcactct 8820541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 20000740 - 20000658
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaa-ttacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactct 229  Q
    ||||| |||||||||||| ||||||| |||||| || ||||||  || |||||| ||| |||||||| | |||||||||||||    
T  20000740 tgttcacgtatgtaaacacaagttaaattacaatagatgagctgttcggtgaaatgtcttaggtggaatttcaagagcactct 20000658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 23459305 - 23459362
Alignment:
Q  154 cgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtg 211  Q
    |||||||||||| ||||||||||||| ||||||| | || ||||||| ||| ||||||    
T  23459305 cgtatgtaaacacaagttaattacaataggtgagttgctgagtgaaatgtcttaggtg 23459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 7351735 - 7351925
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||    
T  7351735 tgttcacgtatgtaaacacaagataattacaacaggtgagctactcagtgaaacatcttaggtggagtctcaagagcactcttaaaaagtaaatgaataa 7351834  T
Q  248 tatactgatttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttct 339  Q
    || | || |||||   | | |||| |   |  |||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||||    
T  7351835 tacattgttttcaccatctggaatctcctctctcaaacatctaagtgtc-cccttttatagtcatcaaagtgttggtttaatgggcctttct 7351925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 3400658 - 3400576
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaa-ttacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactct 229  Q
    ||||| |||||||||||| ||||||| |||||| ||||||||| ||| |||||| |||||||||||| | |||||||||||||    
T  3400658 tgttcacgtatgtaaacacaagttaaattacaataggtgagctgctcggtgaaatgtcctaggtggaatttcaagagcactct 3400576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 11801455 - 11801376
Alignment:
Q  146 agtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagca 225  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||   ||||||||| ||| |||||||| | |||||||||    
T  11801455 agtgttcacgtatgtgaacacaagttaattataacaggtgagcggttcagtgaaatgtcttaggtggaatttcaagagca 11801376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 42606714 - 42606646
Alignment:
Q  158 tgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcact 227  Q
    |||||||| ||||||||||||||| || |||| |||| ||||| || ||||||||| | |||||||||||    
T  42606714 tgtaaacacaagttaattacaacatgtaagctactcaatgaaatgttctaggtggaat-tcaagagcact 42606646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 13117437 - 13117385
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaa 200  Q
    ||||| |||||||||||| |||||||||||| ||  |||||| ||||||||||    
T  13117437 tgttcacgtatgtaaacacaagttaattacaccatatgagctgctcagtgaaa 13117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 17835187 - 17835085
Alignment:
Q  146 agtgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaat 245  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||  |||||| |||||    
T  17835187 agtgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtcctaggtggagtctcaagagcact-ttacaaagtaactgaat 17835089  T
Q  246 aata 249  Q
    ||||    
T  17835088 aata 17835085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 25248880 - 25248981
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||  ||||||||  ||||||    
T  25248880 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtccaaggtggagtctcaagagcactctacagaagtaacagaataa 25248979  T
Q  248 ta 249  Q
    ||    
T  25248980 ta 25248981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 12611862 - 12612054
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||| |||  |||||| || ||||    
T  12611862 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtcctaggtgaagtctcaatagcact-ttacaaagtaactggataa 12611960  T
Q  248 tatactg-atttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||   ||  ||||| | | | | || |||||||||  ||||||||   ||  ||||||||||||||||||||||| | |||||||| |||||||||    
T  12611961 taccatgtttttcactctctgggatctgtcccatc--acatctaaacttcccccttttatagtcctcaaagtgttggcttaatgggcctttctctg 12612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 12599187 - 12599379
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcactcttaagaagtaaatgaataa 247  Q
    ||||| ||||| |||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||  |||||| || ||||    
T  12599187 tgttcacgtatctaaacacaagttagttacaacaggtgagctgctcagtaaaacgtcctaggtggagtctcaatagcact-ttacaaagtaactggataa 12599285  T
Q  248 tatactg-atttcattgttttgaatatgtcccatcaaacatctaagtgtcttccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||   ||  ||||| | | | | || |||||||||  ||||||||   ||  ||||||||||||||||||||||| | |||||||| |||||||||    
T  12599286 taccatgtttttcactctctgggatctgtcccatc--acatctaaacttcccccttttatagtcctcaaagtgttggcttaatgggcctttctctg 12599379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 23792854 - 23792797
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaattacaacaggtgagcttctcagtgaaacgtcc 205  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| | |||||||||| ||||    
T  23792854 tgttcacgtatgtaaacacaagataattacaacatgtgagttgctcagtgaaatgtcc 23792797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 17835036 - 17834996
Alignment:
Q  299 ccttttatagtcctcaaagtgttagtttaatgggtctttct 339  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  17835036 ccttttatagtcctcaaagtgttggcttaatgggcctttct 17834996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 39290542 - 39290430
Alignment:
Q  35 gtcagacttaatataccaaaatcgaaacgcttaaaagtaatagacaatagtgaactatcatttagcgctccatatttctacatcttcaagcagcttctgg 134  Q
    |||||||||||||||||||||| ||||||||||| ||||  | ||||||||| ||||||||||| || |||||||||||||||||||  ||||||| ||     
T  39290542 gtcagacttaatataccaaaattgaaacgcttaatagtagcaaacaatagtgtactatcatttaccgttccatatttctacatcttcgggcagcttttga 39290443  T
Q  135 taaatagaagtag 147  Q
    ||||||| |||||    
T  39290442 taaataggagtag 39290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 38809600 - 38809680
Alignment:
Q  148 tgttcgcgtatgtaaacataagttaa-ttacaacaggtgagcttctcagtgaaacgtcctaggtggagtctcaagagcact 227  Q
    ||||| |||||||||||| ||||||| || ||||||||||||| ||| |||||| |||||||||||| |  ||||||||||    
T  38809600 tgttcacgtatgtaaacacaagttaaatttcaacaggtgagctgctcggtgaaatgtcctaggtggaattccaagagcact 38809680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 20645 - 20602
Alignment:
Q  299 ccttttatagtcctcaaagtgttagtttaatgggtctttctctg 342  Q
    ||||||||||||||||||||||| | |||||||| |||||||||    
T  20645 ccttttatagtcctcaaagtgttggcttaatgggcctttctctg 20602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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