View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_17 (Length: 333)
Name: NF13675_high_17
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 123 - 333
Target Start/End: Original strand, 38360371 - 38360581
Alignment:
| Q |
123 |
tctaatttaacagattagtgatacaacaatcactatgtggatgcatggctaattataattacttttataacnnnnnnnnnncagtgaatttcaattcaaa |
222 |
Q |
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| T |
38360371 |
tctaatttaacagattaataatacaacaatcactatgtggatgcatggctaattataattacttttataataaaaaaataacagtgaatttcaattcaaa |
38360470 |
T |
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| Q |
223 |
ggctttgatacacaaattgaatttagaaaatttaaaagaacagacaaaaaatactctgtttttggtatatatgtgattttgcaaggtgaaataaaaacat |
322 |
Q |
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| T |
38360471 |
ggctttgatacacaaattgaatttagaaaatttaaaagaacaaacaaaaaatactctgtttttggtatatatgtgattttgcaaggtgaaataaaaacat |
38360570 |
T |
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| Q |
323 |
aagcatgtgat |
333 |
Q |
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| T |
38360571 |
aagcatgtgat |
38360581 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 38360234 - 38360325
Alignment:
| Q |
12 |
tattctgtattgcgtcactagcactaactaacaccagccaggtgaatttcaaagatcctaaaaccaaaacaaaatgatcaatgaatctaagtcggc |
107 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38360234 |
tattctgtattgcgtcactagcacta----acaccagccaggtgaatttcaaagatcctaaaaccaaaacaaaatgatcaataaatctaagtcggc |
38360325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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