View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_18 (Length: 332)
Name: NF13675_high_18
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 40803982 - 40803660
Alignment:
| Q |
10 |
caatgtcttgactcaaaatctttacatattggatatatggatctttatttagctcaagtgttatcaaattcaggactaattattcgcatttgaattaaaa |
109 |
Q |
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| T |
40803982 |
caatgtcttgactcaaaatctttacatattggatatatggacctttatttagctcaagtcttatcaaattcaggactaattattcacatttgaattaaaa |
40803883 |
T |
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| Q |
110 |
caatctttccacaagtgaaaactacttttgctactatgattcaatgatgtatatagatccatttccactctccctttcagtggaattttgggtcaagttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40803882 |
caatctttccacaagtgaaaactacttttgctactacgattcaatgatgtatatagatccatttccactctccctttcagtggaattttgggtcaagttg |
40803783 |
T |
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| Q |
210 |
ttagagataagcaaccagaggcaatccacaagtgtgaaggaggaggaactaatattaagttacagctggcttgactgcaaccccaaattttgctactatg |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40803782 |
ttagagataagaaaccagaggcaatccacaagtgtgaaggaggaggaactaatattaagttacagctggcttgactgcaaccccaaattttgctactatg |
40803683 |
T |
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| Q |
310 |
caagggttccacattgtaagtat |
332 |
Q |
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||||||||||||||||||||||| |
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| T |
40803682 |
caagggttccacattgtaagtat |
40803660 |
T |
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