View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_20 (Length: 318)
Name: NF13675_high_20
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 14869127 - 14868855
Alignment:
| Q |
19 |
tgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgatta |
118 |
Q |
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| T |
14869127 |
tgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgatta |
14869028 |
T |
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| Q |
119 |
tggttacatccacaccatgcatagcaaaaagccttgctatgtctactacgaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcat |
218 |
Q |
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| T |
14869027 |
tggttacatccacaccatgcatagcaaaaagccttgctatgtctactacaaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcat |
14868928 |
T |
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| Q |
219 |
tgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgttttaaggcaaaggttgataa |
291 |
Q |
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| T |
14868927 |
tgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgttttaaggcaaaggttgataa |
14868855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 16909541 - 16909800
Alignment:
| Q |
19 |
tgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgatta |
118 |
Q |
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| T |
16909541 |
tgtggaaacttgacaatgtgagttctaatggaccgaccgcgacttgaatcgtggtcgatggaggtttgaaaaatggctgcatttgctggtgtggtgatta |
16909640 |
T |
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| Q |
119 |
tggttacatccacaccatgcatagcaaaaagccttgctatgtctactacgaaaatgaggtgac--tttttgatataaaaggaagaaaaacagcttttagc |
216 |
Q |
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| T |
16909641 |
tggtaacatccacattatgcatagcaaaaagccttgctatgtctactacgaaaatgaggtgactttttttgatataaagggaagaaaaacagcttttaac |
16909740 |
T |
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| Q |
217 |
attgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgttttaa |
276 |
Q |
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| T |
16909741 |
attgtttcttcttcaactttcacaccaaaggattccattagaaattagattttgttttaa |
16909800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 12611293 - 12611241
Alignment:
| Q |
109 |
gtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtc |
161 |
Q |
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| T |
12611293 |
gtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccatgtc |
12611241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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