View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_4 (Length: 699)
Name: NF13675_high_4
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 24 - 672
Target Start/End: Complemental strand, 36324258 - 36323625
Alignment:
| Q |
24 |
atcaaaatatatatgattaagtagttttactc--tactttttagtgcttaagctatgatcaacatcaagtgagatatttagttagttttggatagtagtg |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||| | |
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| T |
36324258 |
atcaaaatatatatgattaagtagttttactcgatagtttttagtgcttaagctatgatcaacat------------------agctttggatagtagcg |
36324177 |
T |
|
| Q |
122 |
agagtaaacctgtaaatgtctctatgaggtagatactctatttccattatagcttctttgtcctgttcaatttcatatagttctcttgagtctgcaggaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
36324176 |
agagtgcacctgtaaatgtctctatgaggtagatactctatttccattaaagcttctttgtcctgttcaatttcatatagttctccagagtcagcaggaa |
36324077 |
T |
|
| Q |
222 |
gggacagatttctgttgcgaattgcagcaatgtatacctggaaaattaacagcttcatcaatgctatctttatactaataatttatttattttccaaata |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
36324076 |
gggacagatttctgttgcgaattgcagcaatgtatacctggaaaatcaacagcttcatcaatgctatctttatactactaatttatttattttccgaata |
36323977 |
T |
|
| Q |
322 |
tctgaaaatttgtttcca--attctcccattaattttttaactttcaatatttttatcgaaaaaagacatacgaccatgttagtggccgtctgcacgcta |
419 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
36323976 |
tcagaaaatttgtttccatgattctcccattaatttgt-aactttcaatatttttatcgagaaaagacatacgaccatgttagtggccgtctgcacccta |
36323878 |
T |
|
| Q |
420 |
gctagtttaatatagtatacctgcagtatctcaacaattggattagttctttgtgcaacatgaatccggtatagtggaaatccaaaggcaaaggtgatca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36323877 |
gctagtttaatatagtatacctgcagtatctcaacaattggattagttctttgtgcaacatgaatccggtatagtggtaatccaaaggcaaaggtgatca |
36323778 |
T |
|
| Q |
520 |
tagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323777 |
tagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaac |
36323678 |
T |
|
| Q |
620 |
gcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctt |
672 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36323677 |
gcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgtttctt |
36323625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 461 - 672
Target Start/End: Complemental strand, 36330682 - 36330471
Alignment:
| Q |
461 |
attagttctttgtgcaacatgaatccggtatagtggaaatccaaaggcaaaggtgatcatagcaaagacaatagcaatggtggagattcccaaacccaaa |
560 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| || ||| || |
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|
| T |
36330682 |
attagttctttgtgcagcatgaattctgtatagtggcaatccaagggcaaagatgatcatagcaaagacaatagcaatggtggatattccaaatccccaa |
36330583 |
T |
|
| Q |
561 |
tcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacattt |
660 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
36330582 |
tcccatcctttgctgttttgtatccatacattaaatgttaagctgacagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacattt |
36330483 |
T |
|
| Q |
661 |
gtcttgcttctt |
672 |
Q |
| |
|
|||||| ||||| |
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|
| T |
36330482 |
gtcttgtttctt |
36330471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 60 - 267
Target Start/End: Complemental strand, 36331325 - 36331124
Alignment:
| Q |
60 |
ttttagtgcttaagctatgatcaacatcaagtgagatatttagttagttttggatagtagtgagagtaaacctgtaaatgtctctatgaggtagatactc |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||| |
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|
| T |
36331325 |
ttttagtgcttaagctatgatcaa------gtgacatatagtgttagttttggatagtagttgaagtgaacctgaaaatgtctctatgtggtagatactc |
36331232 |
T |
|
| Q |
160 |
tatttccattatagcttctttgtcctgttcaatttcatatagttctcttgagtctgcaggaagggacagatttctgttgcgaattgcagcaatgtatacc |
259 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| || ||| |
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|
| T |
36331231 |
tatttccaccgcagcttctttgtcatgttcaatttcatatagttcttcagagtctgcaggatggggcagatttctgttgcgaattgcagcaatataaacc |
36331132 |
T |
|
| Q |
260 |
tggaaaat |
267 |
Q |
| |
|
|||||||| |
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|
| T |
36331131 |
tggaaaat |
36331124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 660
Target Start/End: Complemental strand, 5459004 - 5458903
Alignment:
| Q |
559 |
aatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacat |
658 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||||||||||| | |||||| | ||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
5459004 |
aatcccatcctttgttgatttgtatccatacaatgaaagttaagctgactgcaccacccatgcaaacagcaagcaagagaacattaaagaatgtggacat |
5458905 |
T |
|
| Q |
659 |
tt |
660 |
Q |
| |
|
|| |
|
|
| T |
5458904 |
tt |
5458903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 5459379 - 5459303
Alignment:
| Q |
128 |
aacctgtaaatgtctctatgaggtagatactctatttccattatagcttctttgtcctgttcaatttcatatagttc |
204 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
5459379 |
aacctgaaaatgtctctatgaggtagaaactcaatttcctcagaagcttccttgtcctgttcaatttcatatagttc |
5459303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 672
Target Start/End: Complemental strand, 37920086 - 37919973
Alignment:
| Q |
559 |
aatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacat |
658 |
Q |
| |
|
||||||| |||||| ||| ||||||| |||||||||| |||||| ||||||||||| ||| ||||| |||| |||||| ||||||| ||||| ||||| |
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|
| T |
37920086 |
aatcccaccctttgctgttttgtatctatacattaaatgttaagttgacagaaccatcaatgcaaacaacaagtaagagaacattaaataagctagacat |
37919987 |
T |
|
| Q |
659 |
ttgtcttgcttctt |
672 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
37919986 |
ttgtcttgtttctt |
37919973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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