View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13675_high_5 (Length: 502)

Name: NF13675_high_5
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13675_high_5
NF13675_high_5
[»] chr2 (2 HSPs)
chr2 (101-253)||(600503-600654)
chr2 (190-239)||(45391859-45391908)
[»] chr1 (3 HSPs)
chr1 (101-253)||(2427199-2427351)
chr1 (106-238)||(50549329-50549463)
chr1 (209-253)||(12436294-12436338)
[»] chr6 (1 HSPs)
chr6 (109-253)||(3064737-3064883)
[»] chr3 (1 HSPs)
chr3 (101-183)||(548328-548410)
[»] chr5 (1 HSPs)
chr5 (105-219)||(31692823-31692937)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-228)||(58501-58613)
[»] chr4 (2 HSPs)
chr4 (114-228)||(14781117-14781229)
chr4 (101-155)||(51811763-51811817)
[»] chr7 (2 HSPs)
chr7 (149-183)||(6330507-6330541)
chr7 (146-183)||(6346988-6347025)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 600654 - 600503
Alignment:
Q  101 attagagatatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttttcacaattgtaataata 200  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||  ||||||||||||||    
T  600654 attagagatatatgttagtcatatagttactagttagttagtgcctataaataggcttaaggtgtcacattgtaactaac-tttgtcaattgtaataata 600556  T
Q  201 ctcatttccatcaatacaatactttcatagtttttctctaattcatttcatgg 253  Q
     ||||||||||||||| ||||||||||||  ||||||||  ||| ||||||||    
T  600555 ttcatttccatcaataaaatactttcataacttttctctctttcctttcatgg 600503  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 45391908 - 45391859
Alignment:
Q  190 ttgtaataatactcatttccatcaatacaatactttcatagtttttctct 239  Q
    |||||||| || || || |||||||||||||| |||||||||||||||||    
T  45391908 ttgtaatattattctttaccatcaatacaatattttcatagtttttctct 45391859  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 2427199 - 2427351
Alignment:
Q  101 attagagatatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttttcacaattgtaataata 200  Q
    ||||||||||||| | |||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2427199 attagagatatatatcagtcatatagttactagttagttagtgcctataaataggcttaaggtgtcacattgtaaccaacttttcccaattgtaataata 2427298  T
Q  201 ctcatttccatcaatacaatactttcatagtttttctctaattcatttcatgg 253  Q
     |||||||||||||||   |||||| |||| |||||||| |||| || |||||    
T  2427299 ttcatttccatcaataagttacttttatagcttttctctcattccttccatgg 2427351  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 50549463 - 50549329
Alignment:
Q  106 agatatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttt--tcacaattgtaataatactc 203  Q
    ||||||| ||||||||| || ||| |||||||  |||| ||||||||| |||| ||||||||||||||||| || |||  ||| | ||||||||||| |     
T  50549463 agatataggttagtcatctagttagtagttagctagtgtctataaataagtttgaggtgtcacattgtaactaagttttctcatatttgtaataatatta 50549364  T
Q  204 atttccatcaatacaatactttcatagtttttctc 238  Q
    |||   |||||||||||| |||||||| |||||||    
T  50549363 attcttatcaatacaatagtttcatagcttttctc 50549329  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 12436294 - 12436338
Alignment:
Q  209 catcaatacaatactttcatagtttttctctaattcatttcatgg 253  Q
    ||||||||||||| |||||||| |||||||| |||| ||||||||    
T  12436294 catcaatacaatagtttcatagcttttctctcattcctttcatgg 12436338  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 3064883 - 3064737
Alignment:
Q  109 tatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttttcacaattgtaataatactcatttc 208  Q
    |||||||||||||| || |||||||||||| |||| ||||||||||| ||||| || | ||||||||  | |||||| || | ||||||||| |||||||    
T  3064883 tatatgttagtcatatagttactagttagttagtggctataaataggcttaagatgccccattgtaattatcttttctcattggtaataatattcatttc 3064784  T
Q  209 cat--caatacaatactttcatagtttttctctaattcatttcatgg 253  Q
    |||   |||||||||||||||||  |||||||| |||| ||||||||    
T  3064783 catgagaatacaatactttcataacttttctctcattcctttcatgg 3064737  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 548328 - 548410
Alignment:
Q  101 attagagatatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttt 183  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||| |||||| ||||| ||||||    
T  548328 attagagatatatgttagtcatataattactagttagttagtgcctataaataggcttaaggtatcacatagtaactaacttt 548410  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 31692937 - 31692823
Alignment:
Q  105 gagatatatgttagtcatgtatttactagttagtaagtgcctataaataggtttaaggt-gtcacattgtaaccaacttttcacaattgtaataatactc 203  Q
    |||||||| ||||||||| || |||||||||||| ||||||||||||||||||| |||| || | |||||||||||| |||| || ||| |||| |||||    
T  31692937 gagatataagttagtcatctagttactagttagttagtgcctataaataggtttgaggtagttaaattgtaaccaac-tttctcatttgcaatactactc 31692839  T
Q  204 atttccatcaatacaa 219  Q
    ||| | ||||||||||    
T  31692838 attactatcaatacaa 31692823  T

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Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 58501 - 58613
Alignment:
Q  114 gttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttttcacaattgtaataatactcatttccatca 213  Q
    ||||||||  || |||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||| |||| |  ||||||||||| ||||||  ||||    
T  58501 gttagtcacctagttactagttagttagtgc-tataaataggcttaaggtgccacattgtaactaac-tttctcttttgtaataatattcatttttatca 58598  T
Q  214 atacaatactttcat 228  Q
    | |||||||||||||    
T  58599 acacaatactttcat 58613  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 14781229 - 14781117
Alignment:
Q  114 gttagtcatgtatttactagttagtaagtgcctataaataggtttaaggtgtcacattgtaaccaacttttcacaattgtaataatactcatttccatca 213  Q
    ||||||||  || |||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||| |||| |  ||||||||||| ||||||  ||||    
T  14781229 gttagtcacctagttactagttagttagtgc-tataaataggcttaaggtgccacattgtaactaac-tttctcttttgtaataatattcatttttatca 14781132  T
Q  214 atacaatactttcat 228  Q
    | |||||||||||||    
T  14781131 acacaatactttcat 14781117  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 51811763 - 51811817
Alignment:
Q  101 attagagatatatgttagtcatgtatttactagttagtaagtgcctataaatagg 155  Q
    |||||||||||| ||| ||||| || |||||||||||| ||||||||||||||||    
T  51811763 attagagatatacgttggtcatatacttactagttagttagtgcctataaatagg 51811817  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 6330541 - 6330507
Alignment:
Q  149 aaataggtttaaggtgtcacattgtaaccaacttt 183  Q
    |||||||||||||||||||||||||||||||||||    
T  6330541 aaataggtttaaggtgtcacattgtaaccaacttt 6330507  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 6347025 - 6346988
Alignment:
Q  146 tataaataggtttaaggtgtcacattgtaaccaacttt 183  Q
    |||||||||||||||| |||||||||||||||||||||    
T  6347025 tataaataggtttaagctgtcacattgtaaccaacttt 6346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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