View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_7 (Length: 489)
Name: NF13675_high_7
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 23828864 - 23829344
Alignment:
| Q |
9 |
caaagggaagataccgcgatttcaatacctcaaatgtcttgctagattcagtatgtatccatttctacacacaaaaacacattaatatattatatttatt |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23828864 |
caaaaggaaaataccgcgatttcaatacctcaaatgtcttgctagattcagtatgtgtccttttctacacacaaaaacacattaatatattatatttatt |
23828963 |
T |
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| Q |
109 |
tatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatggttgata |
208 |
Q |
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| T |
23828964 |
tatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatggttgata |
23829063 |
T |
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| Q |
209 |
aaagtcatgtctccaccaagctaacatacggatatgcagctccagaatacctcgcctccggtataataactactagacagattttatgtctttctgtata |
308 |
Q |
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| T |
23829064 |
aaagtcatgtctccaccaagctaacatacggatatgcagctccagaatacctcgcctccggtataataactactagacagattttatgtctttctgtata |
23829163 |
T |
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| Q |
309 |
tgaatttctgttgtttaatcaacttttttagtatcttttgtctgttgagttcattaacttgctcaagaatcaattgtatcattttgattagtgactagta |
408 |
Q |
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| T |
23829164 |
tgaatttccgttgtttaatcaacttttttagtatcttttgtctgttgagttcattaacttgctcaaggatcaattgtatcattttgattagtgactagta |
23829263 |
T |
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| Q |
409 |
taaactgatttgttgataaaggtaatcagactgctaaaagtgatgtatatagttttggagttgtgctattggaaatattat |
489 |
Q |
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| T |
23829264 |
taaactgatttgttgataaaggtaatcacactgctaaaagtgatgtatatagttttggagttgtgctattggaaatattat |
23829344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 23819625 - 23819870
Alignment:
| Q |
20 |
taccgcgatttcaatacctcaaatgtcttgctagattcagtatgtatccatttctacacacaaaaacacattaatatattatatttatttatgtatcata |
119 |
Q |
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| T |
23819625 |
taccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacaca------cataaatacattatgtttatttatgcattgta |
23819718 |
T |
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| Q |
120 |
tctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatggttgataaaagtcatgtc |
219 |
Q |
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| T |
23819719 |
tctgaaaatttcctttttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaagtcatgtc |
23819818 |
T |
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| Q |
220 |
tccaccaagctaacatacggatatgcagctccagaatacctcgcctccggta |
271 |
Q |
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| T |
23819819 |
accaccaagctaacctacggatatgcggctccagaatacttagccaccggta |
23819870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 260
Target Start/End: Original strand, 23832777 - 23832952
Alignment:
| Q |
85 |
acacattaatatattatatttatttatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcatt |
184 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||| | |
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| T |
23832777 |
acacatgaatatattacgtttatttatgtattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttcaaattttggcctgg |
23832876 |
T |
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| Q |
185 |
caaagggcgggtccatggttgataaaagtcatgtctccaccaagctaacatacggatatgcagctccagaatacct |
260 |
Q |
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| T |
23832877 |
caaagaacttgtccctggttgataaaagtcatgtacctaccaagctaacctctggatatacggctccggaatacct |
23832952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 489
Target Start/End: Original strand, 23820014 - 23820177
Alignment:
| Q |
331 |
cttttttagtatcttttgtctgttgagttcattaacttgctcaagaatcaattgt-----atcattttgattagtgactagtataaactgatttgttgat |
425 |
Q |
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| T |
23820014 |
cttttctagtatgtttcgtctgttgagttcattaacttaatcaataatcaactactaaacatcatttgggttagtgagtaatacaaaatgatttgttaat |
23820113 |
T |
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| Q |
426 |
aaaggtaatcagactgctaaaagtgatgtatatagttttggagttgtgctattggaaatattat |
489 |
Q |
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| T |
23820114 |
gaaggtaatcacactgctaaaagtgttgtgtatagttttggagttgtgctattggaaatgttat |
23820177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 23833112 - 23833180
Alignment:
| Q |
421 |
ttgataaaggtaatcagactgctaaaagtgatgtatatagttttggagttgtgctattggaaatattat |
489 |
Q |
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| T |
23833112 |
ttgatgaaggtaaccacactgctaagagtgatgtctatagttttggagttgtactactagaaatattat |
23833180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 23825016 - 23825188
Alignment:
| Q |
97 |
attatatttatttatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggt |
196 |
Q |
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| T |
23825016 |
attatgtttatttaagtaacatgtttgaaagtttcc--gctgatttgatgacagaattataatgcgaaactctttaattttgggctggcaaaggatgggt |
23825113 |
T |
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| Q |
197 |
ccatggttgataaaagtcatgtctccaccaagctaacatacggatatgcagctccagaatacctcgcctccggta |
271 |
Q |
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| T |
23825114 |
ccacaggtgatcgaagccgtgtctacaccgggcaaatctacggatatgcagctccagaatacctggccaccggta |
23825188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 20550075 - 20550037
Alignment:
| Q |
444 |
aaaagtgatgtatatagttttggagttgtgctattggaa |
482 |
Q |
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| T |
20550075 |
aaaagtgatgtatatagttttggagttgttcttttggaa |
20550037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 475
Target Start/End: Original strand, 49667506 - 49667534
Alignment:
| Q |
447 |
agtgatgtatatagttttggagttgtgct |
475 |
Q |
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| T |
49667506 |
agtgatgtatatagttttggagttgtgct |
49667534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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