View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13675_high_9 (Length: 428)
Name: NF13675_high_9
Description: NF13675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13675_high_9 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: scaffold0090 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 9492 - 9147
Alignment:
| Q |
13 |
tgagagtttcaccaagtggacaagacctatatgtccgaacggacgcatcagacatcggtaaaggcttctattgtctttctctttatttttcttaatgtta |
112 |
Q |
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| T |
9492 |
tgagggtttcacaaagtggacaagatctatatgtccgaacggacgtatcagacatcggtaaaggcttctattgtctttctctttattgttcttaatgtga |
9393 |
T |
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| Q |
113 |
atatatcagttatttagatgatctttgattttgtttgcaaatcacataattgcaggtgataaaaatgggaatactaaaaccgttgtattagcggtatcaa |
212 |
Q |
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| T |
9392 |
atatatcagtcatttcgatgatcatggattttgtttggaaatcatataactgcaggtgataaaaatgcgaatactaaaaccattgtattggcggtatcaa |
9293 |
T |
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| Q |
213 |
ttacagcttcagtagtccttttgatgttattggcagtcacctacatctacataaccaagacaaagtatacaggtaagtttcttaagcatagtccctttta |
312 |
Q |
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| T |
9292 |
tcacatcttcactagtccttttgatattattggcagtaacctacatttatataacaaagacaaagtataaaggtaagtttcttaagcatagtgcctttta |
9193 |
T |
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| Q |
313 |
gatttctcaagattctgaaattaatgaattggattcatgcaatatct |
359 |
Q |
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| T |
9192 |
gatttctcaagattctgaaattaattaatgggattcat-caatatct |
9147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 203 - 427
Target Start/End: Original strand, 13854210 - 13854432
Alignment:
| Q |
203 |
gcggtatcaattacagcttcagtagtccttttgatgttattggcagtcacctacatctacataaccaagacaaagtatacaggtaagtttcttaagcata |
302 |
Q |
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| T |
13854210 |
gcggtatcaattacagcttcagtggtccttttgatgttattggcagtcacctacatctatataaccaagacaaagtataaaggtaagtttcttaagcata |
13854309 |
T |
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| Q |
303 |
gtcccttttagatttctcaagattctgaaattaatgaattggattcatgcaatatctcatagtatttcacttgtgcaagtttcttattaaaatagacatt |
402 |
Q |
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| T |
13854310 |
gtgccttttagatttctcaagattctaaaattaatgaattggattcatgcaatatctc--agtatttcacttgtgcaagtttcttattaaaatagaaatt |
13854407 |
T |
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| Q |
403 |
ttgtagtgacgcttcatgtgctaaa |
427 |
Q |
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| T |
13854408 |
ttgtagtgacgcttcatgtgctaaa |
13854432 |
T |
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