View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13676_high_1 (Length: 410)
Name: NF13676_high_1
Description: NF13676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13676_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 33675762 - 33675361
Alignment:
| Q |
1 |
aggaggtgacactggttctgagcaaccaccaaacttgacacattacacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattat |
100 |
Q |
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| T |
33675762 |
aggaggtgacactggttctgagcaaccaccacacttgacacattagacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattat |
33675663 |
T |
|
| Q |
101 |
tatactattaattttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcc |
200 |
Q |
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| T |
33675662 |
tatactattaattttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcc |
33675563 |
T |
|
| Q |
201 |
caactcaacccaaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattcc |
300 |
Q |
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| T |
33675562 |
caactcaacccaaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattcc |
33675463 |
T |
|
| Q |
301 |
ttttattcatgttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttcga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33675462 |
ttttattcatgttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttgga |
33675363 |
T |
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| Q |
401 |
ca |
402 |
Q |
| |
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|| |
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| T |
33675362 |
ca |
33675361 |
T |
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