View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13676_low_2 (Length: 336)
Name: NF13676_low_2
Description: NF13676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13676_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 14868732 - 14869049
Alignment:
| Q |
1 |
tcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnnnnngggtaagn |
100 |
Q |
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| T |
14868732 |
tcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatcatcagggtaaga |
14868831 |
T |
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| Q |
101 |
nnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
200 |
Q |
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| T |
14868832 |
aaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
14868931 |
T |
|
| Q |
201 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
300 |
Q |
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| T |
14868932 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
14869031 |
T |
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| Q |
301 |
caccacaccatcaaatgc |
318 |
Q |
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| T |
14869032 |
caccacaccatcaaatgc |
14869049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 139 - 318
Target Start/End: Complemental strand, 16909800 - 16909619
Alignment:
| Q |
139 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
236 |
Q |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
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| Q |
237 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgc |
318 |
Q |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgc |
16909619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
254 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
306 |
Q |
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| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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