View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13676_low_3 (Length: 273)
Name: NF13676_low_3
Description: NF13676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13676_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 35805910 - 35805655
Alignment:
| Q |
1 |
ccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctagt |
100 |
Q |
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| T |
35805910 |
ccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctagt |
35805811 |
T |
|
| Q |
101 |
tagaattgaagttaaacaacaccacttgctggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagatat |
200 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805810 |
tagaattgaagtgaaacaacaccacttgttggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagatat |
35805711 |
T |
|
| Q |
201 |
atgtactattcaccaccaccggtgcttacataattcccccaccactgccaccgtgg |
256 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805710 |
atgtacgattcaccaccaccggtgcttacataattcccccaccactgccaccgtgg |
35805655 |
T |
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