View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13677_low_2 (Length: 329)

Name: NF13677_low_2
Description: NF13677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13677_low_2
NF13677_low_2
[»] chr6 (7 HSPs)
chr6 (11-198)||(26640971-26641158)
chr6 (11-198)||(26746937-26747124)
chr6 (227-329)||(26641187-26641289)
chr6 (227-329)||(26747153-26747255)
chr6 (247-326)||(26828705-26828784)
chr6 (257-329)||(26890864-26890936)
chr6 (11-51)||(31289542-31289582)
[»] chr8 (1 HSPs)
chr8 (9-51)||(29269787-29269829)
[»] chr4 (2 HSPs)
chr4 (147-197)||(18650415-18650465)
chr4 (148-197)||(18718634-18718683)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 26640971 - 26641158
Alignment:
Q  11 cagaacctgtgtagacgcaacaacactgtatggctcttgtgtttacaaggaccatattttcatcactaaacatgnnnnnnnnccgcatttggcagaaaag 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  26640971 cagaacttgtgtagacgcaacaacactgtatggctcttgtgtttacaaggaccatattttcatcactaaacatgttttttttccgcatttggcagaaaag 26641070  T
Q  111 tgatttgtccagctagccacataatagaagacgctgaagtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtcta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26641071 tgatttgtccagctagccacataatagaagacgctgaagtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtcta 26641158  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 26746937 - 26747124
Alignment:
Q  11 cagaacctgtgtagacgcaacaacactgtatggctcttgtgtttacaaggaccatattttcatcactaaacatgnnnnnnnnccgcatttggcagaaaag 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  26746937 cagaacttgtgtagacgcaacaacactgtatggctcttgtgtttacaaggaccatattttcatcactaaacatgttttttttccgcatttggcagaaaag 26747036  T
Q  111 tgatttgtccagctagccacataatagaagacgctgaagtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtcta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26747037 tgatttgtccagctagccacataatagaagacgctgaagtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtcta 26747124  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 26641187 - 26641289
Alignment:
Q  227 attggatcaacaatgcactactcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaa 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26641187 attggatcaacaatgcactactcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaa 26641286  T
Q  327 tct 329  Q
    |||    
T  26641287 tct 26641289  T

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Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 26747153 - 26747255
Alignment:
Q  227 attggatcaacaatgcactactcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaa 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26747153 attggatcaacaatgcactactcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaa 26747252  T
Q  327 tct 329  Q
    |||    
T  26747253 tct 26747255  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 26828705 - 26828784
Alignment:
Q  247 ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaa 326  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||    
T  26828705 ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 26890864 - 26890936
Alignment:
Q  257 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatct 329  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| |||||||||||||||||||||||    
T  26890864 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatct 26890936  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 31289542 - 31289582
Alignment:
Q  11 cagaacctgtgtagacgcaacaacactgtatggctcttgtg 51  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtg 31289582  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 29269829 - 29269787
Alignment:
Q  9 agcagaacctgtgtagacgcaacaacactgtatggctcttgtg 51  Q
    |||||||| |||||||  |||||||||||||||||||||||||    
T  29269829 agcagaacttgtgtagcagcaacaacactgtatggctcttgtg 29269787  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 18650465 - 18650415
Alignment:
Q  147 aagtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtct 197  Q
    ||||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  18650465 aagtattcttgtgtttcgtcaaagttcgggtttgtaattaatagcaagtct 18650415  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 18718683 - 18718634
Alignment:
Q  148 agtattcttgtgtttcgttaaagtctgggtttgtaataaatagaaagtct 197  Q
    |||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  18718683 agtattcttgtgtttcgtcaaagttcgggtttgtaattaatagcaagtct 18718634  T

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