View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13677_low_3 (Length: 281)

Name: NF13677_low_3
Description: NF13677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13677_low_3
NF13677_low_3
[»] chr1 (1 HSPs)
chr1 (13-151)||(42242601-42242739)
[»] scaffold0014 (1 HSPs)
scaffold0014 (148-262)||(8247-8361)
[»] chr7 (2 HSPs)
chr7 (148-262)||(18789423-18789537)
chr7 (204-259)||(22249525-22249580)
[»] chr8 (1 HSPs)
chr8 (150-262)||(44614780-44614892)
[»] chr4 (6 HSPs)
chr4 (150-262)||(1994391-1994503)
chr4 (150-262)||(9403781-9403893)
chr4 (148-262)||(56558693-56558807)
chr4 (152-262)||(20359431-20359541)
chr4 (148-262)||(30454141-30454255)
chr4 (150-262)||(24807883-24807995)
[»] chr3 (2 HSPs)
chr3 (150-262)||(3299743-3299855)
chr3 (150-261)||(8961900-8962002)
[»] chr2 (2 HSPs)
chr2 (158-255)||(20266537-20266636)
chr2 (172-212)||(36302433-36302473)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 42242739 - 42242601
Alignment:
Q  13 aatatggattccaaacatatggtgagtcaactgatagctgcaaaaatcaaagaaataatttttaaccggatagaatcaaagagtataaatcttcttttat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  42242739 aatatggattccaaacatatggtgagtcaactgatagctgcaaaaatcaaagaaataatttttaaccggatagaatcaaagagtatagatcttcttttct 42242640  T
Q  113 tcttttgtatgcgtgaaagaaattcgttaagagtgttag 151  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  42242639 tcttttgtatgcgtgaaagaaattagttaagagtgttag 42242601  T

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Target: scaffold0014 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 8247 - 8361
Alignment:
Q  148 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 247  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8247 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattcgaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcat 8346  T
Q  248 tgtttgggtaaagtg 262  Q
    |||||||||||||||    
T  8347 tgtttgggtaaagtg 8361  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 18789537 - 18789423
Alignment:
Q  148 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 247  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  18789537 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaatttaaatgcttcaattgaattcctttcattttcaaaattcat 18789438  T
Q  248 tgtttgggtaaagtg 262  Q
    |||||||||||||||    
T  18789437 tgtttgggtaaagtg 18789423  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 22249580 - 22249525
Alignment:
Q  204 aattcaaatgcttcatttgaattcctttcattttcaaaattcattgtttgggtaaa 259  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  22249580 aattcaaatgcttcaattgaattcctttcatttttaaaatttattgtttgggtaaa 22249525  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 44614892 - 44614780
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44614892 agagtgtgtttggatagagcatttgaaaatccaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcattg 44614793  T
Q  250 tttgggtaaagtg 262  Q
    |||||||||||||    
T  44614792 tttgggtaaagtg 44614780  T

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Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 1994503 - 1994391
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1994503 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcattg 1994404  T
Q  250 tttgggtaaagtg 262  Q
    |||||||||||||    
T  1994403 tttgggtaaagtg 1994391  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 9403781 - 9403893
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  9403781 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcatttcattttcaaaattcattg 9403880  T
Q  250 tttgggtaaagtg 262  Q
    |||||||||||||    
T  9403881 tttgggtaaagtg 9403893  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 56558693 - 56558807
Alignment:
Q  148 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 247  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  56558693 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattaaaaggaattcaaatgcttcaattgaattcatttcattttcaaaattcat 56558792  T
Q  248 tgtttgggtaaagtg 262  Q
    |||||||||||||||    
T  56558793 tgtttgggtaaagtg 56558807  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 20359541 - 20359431
Alignment:
Q  152 agtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattgtt 251  Q
    ||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20359541 agtgtgtttggatagagcatttgaaaattcaaggggatttaaaattctaaggaattcaaatgcttcaattgaattcctttcattttcaaaattctttgtt 20359442  T
Q  252 tgggtaaagtg 262  Q
    ||| |||||||    
T  20359441 tggataaagtg 20359431  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 30454141 - 30454255
Alignment:
Q  148 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 247  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||||||||||||    
T  30454141 ttagagtgtgtttggatagaggatttgaaaattcaagagaatttgaaatcctaagaaattcaaatgcttcaattgaatttcgttcattttcaaaattcat 30454240  T
Q  248 tgtttgggtaaagtg 262  Q
    ||||||| |||||||    
T  30454241 tgtttggataaagtg 30454255  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 24807883 - 24807995
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| |||||||||||    
T  24807883 agagtgtgtttggatggaggatttgaaaatccaagagaatttgaaattctaaggatttcaaatgcttcaattgaattcccttaatttttaaaattcattg 24807982  T
Q  250 tttgggtaaagtg 262  Q
    ||||| |||||||    
T  24807983 tttggataaagtg 24807995  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 3299855 - 3299743
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  3299855 agagtgtgtttggatagagcatttaaaaatttaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcattttctaaattcattg 3299756  T
Q  250 tttgggtaaagtg 262  Q
    ||| |||||||||    
T  3299755 tttaggtaaagtg 3299743  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 8962002 - 8961900
Alignment:
Q  150 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 249  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||         |||||||||||||||||||||||||||||     
T  8962002 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaa---------ttgaattcctttcattttcaaaattcatta 8961912  T
Q  250 tttgggtaaagt 261  Q
    ||||||||||||    
T  8961911 tttgggtaaagt 8961900  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 20266636 - 20266537
Alignment:
Q  158 tttggatagagcatttgaaaattcaagagaatttgaaattcta--aggaattcaaatgcttcatttgaattcctttcattttcaaaattcattgtttggg 255  Q
    ||||||||||  ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  20266636 tttggatagatgatttgaaaattcaagggaatttgaaattctataaggaattcaaatgcttcaattgaatttcttttatttttaaaattcattgtttggg 20266537  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 36302433 - 36302473
Alignment:
Q  172 ttgaaaattcaagagaatttgaaattctaaggaattcaaat 212  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  36302433 ttgaaaattttagagaatttgaaattttaaggaattcaaat 36302473  T

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