View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13677_low_4 (Length: 266)

Name: NF13677_low_4
Description: NF13677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13677_low_4
NF13677_low_4
[»] chr1 (1 HSPs)
chr1 (14-136)||(42242601-42242723)
[»] scaffold0014 (1 HSPs)
scaffold0014 (133-247)||(8247-8361)
[»] chr7 (2 HSPs)
chr7 (133-247)||(18789423-18789537)
chr7 (189-244)||(22249525-22249580)
[»] chr8 (1 HSPs)
chr8 (135-247)||(44614780-44614892)
[»] chr4 (6 HSPs)
chr4 (135-247)||(1994391-1994503)
chr4 (135-247)||(9403781-9403893)
chr4 (133-247)||(56558693-56558807)
chr4 (137-247)||(20359431-20359541)
chr4 (133-247)||(30454141-30454255)
chr4 (135-247)||(24807883-24807995)
[»] chr3 (2 HSPs)
chr3 (135-247)||(3299743-3299855)
chr3 (135-246)||(8961900-8962002)
[»] chr2 (2 HSPs)
chr2 (143-240)||(20266537-20266636)
chr2 (157-197)||(36302433-36302473)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 42242723 - 42242601
Alignment:
Q  14 atatggtgagtcaactgatagctgcaaaaatcaaagaaataatttttaaccggatagaatcaaagagtataaatcttcttttattcttttgtatgcgtga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  42242723 atatggtgagtcaactgatagctgcaaaaatcaaagaaataatttttaaccggatagaatcaaagagtatagatcttcttttcttcttttgtatgcgtga 42242624  T
Q  114 aagaaattcgttaagagtgttag 136  Q
    |||||||| ||||||||||||||    
T  42242623 aagaaattagttaagagtgttag 42242601  T

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Target: scaffold0014 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 8247 - 8361
Alignment:
Q  133 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 232  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8247 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattcgaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcat 8346  T
Q  233 tgtttgggtaaagtg 247  Q
    |||||||||||||||    
T  8347 tgtttgggtaaagtg 8361  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 18789537 - 18789423
Alignment:
Q  133 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 232  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  18789537 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaatttaaatgcttcaattgaattcctttcattttcaaaattcat 18789438  T
Q  233 tgtttgggtaaagtg 247  Q
    |||||||||||||||    
T  18789437 tgtttgggtaaagtg 18789423  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 22249580 - 22249525
Alignment:
Q  189 aattcaaatgcttcatttgaattcctttcattttcaaaattcattgtttgggtaaa 244  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  22249580 aattcaaatgcttcaattgaattcctttcatttttaaaatttattgtttgggtaaa 22249525  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 44614892 - 44614780
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44614892 agagtgtgtttggatagagcatttgaaaatccaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcattg 44614793  T
Q  235 tttgggtaaagtg 247  Q
    |||||||||||||    
T  44614792 tttgggtaaagtg 44614780  T

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Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 1994503 - 1994391
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1994503 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcattttcaaaattcattg 1994404  T
Q  235 tttgggtaaagtg 247  Q
    |||||||||||||    
T  1994403 tttgggtaaagtg 1994391  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 9403781 - 9403893
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  9403781 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcatttcattttcaaaattcattg 9403880  T
Q  235 tttgggtaaagtg 247  Q
    |||||||||||||    
T  9403881 tttgggtaaagtg 9403893  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 56558693 - 56558807
Alignment:
Q  133 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 232  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  56558693 ttagagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattaaaaggaattcaaatgcttcaattgaattcatttcattttcaaaattcat 56558792  T
Q  233 tgtttgggtaaagtg 247  Q
    |||||||||||||||    
T  56558793 tgtttgggtaaagtg 56558807  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 20359541 - 20359431
Alignment:
Q  137 agtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattgtt 236  Q
    ||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20359541 agtgtgtttggatagagcatttgaaaattcaaggggatttaaaattctaaggaattcaaatgcttcaattgaattcctttcattttcaaaattctttgtt 20359442  T
Q  237 tgggtaaagtg 247  Q
    ||| |||||||    
T  20359441 tggataaagtg 20359431  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 30454141 - 30454255
Alignment:
Q  133 ttagagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcat 232  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||||||||||||    
T  30454141 ttagagtgtgtttggatagaggatttgaaaattcaagagaatttgaaatcctaagaaattcaaatgcttcaattgaatttcgttcattttcaaaattcat 30454240  T
Q  233 tgtttgggtaaagtg 247  Q
    ||||||| |||||||    
T  30454241 tgtttggataaagtg 30454255  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 24807883 - 24807995
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| |||||||||||    
T  24807883 agagtgtgtttggatggaggatttgaaaatccaagagaatttgaaattctaaggatttcaaatgcttcaattgaattcccttaatttttaaaattcattg 24807982  T
Q  235 tttgggtaaagtg 247  Q
    ||||| |||||||    
T  24807983 tttggataaagtg 24807995  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 3299855 - 3299743
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  3299855 agagtgtgtttggatagagcatttaaaaatttaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcattttctaaattcattg 3299756  T
Q  235 tttgggtaaagtg 247  Q
    ||| |||||||||    
T  3299755 tttaggtaaagtg 3299743  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 8962002 - 8961900
Alignment:
Q  135 agagtgtatttggatagagcatttgaaaattcaagagaatttgaaattctaaggaattcaaatgcttcatttgaattcctttcattttcaaaattcattg 234  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||         |||||||||||||||||||||||||||||     
T  8962002 agagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaa---------ttgaattcctttcattttcaaaattcatta 8961912  T
Q  235 tttgggtaaagt 246  Q
    ||||||||||||    
T  8961911 tttgggtaaagt 8961900  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 20266636 - 20266537
Alignment:
Q  143 tttggatagagcatttgaaaattcaagagaatttgaaattcta--aggaattcaaatgcttcatttgaattcctttcattttcaaaattcattgtttggg 240  Q
    ||||||||||  ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  20266636 tttggatagatgatttgaaaattcaagggaatttgaaattctataaggaattcaaatgcttcaattgaatttcttttatttttaaaattcattgtttggg 20266537  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 36302433 - 36302473
Alignment:
Q  157 ttgaaaattcaagagaatttgaaattctaaggaattcaaat 197  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  36302433 ttgaaaattttagagaatttgaaattttaaggaattcaaat 36302473  T

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