View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13677_low_5 (Length: 244)
Name: NF13677_low_5
Description: NF13677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13677_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 560571 - 560783
Alignment:
| Q |
18 |
cagcagcagcaaccatcgcatgtgcaccctcaaatatggcagacatgcaccggcgctgccgtccaaataccaaagttgcattcaagagtttactattttc |
117 |
Q |
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| T |
560571 |
cagcagcagcaaccatcgcatgtgcaccctcaaatatggcagacatgcaccggcgctgccgtccaaataccaaagttgcattccagagtttactattttc |
560670 |
T |
|
| Q |
118 |
cacaaggccacttagaatatgcttcttcttcctcctccaatgcttacattcactcccttgatcttcaacgttttcgtcctttcactatctgtatcatctc |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
560671 |
cacaaggccacttagaacatgcttcttcttcctcctccaatgcttacattcactcccttgatcttcaacgttttcgtcctttcactatctgtatcatctc |
560770 |
T |
|
| Q |
218 |
cgctgttcatctc |
230 |
Q |
| |
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||||||| ||||| |
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| T |
560771 |
cgctgttgatctc |
560783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 515758 - 515553
Alignment:
| Q |
25 |
agcaaccatcgcatgtgcaccctcaaatatggcagacatgcaccggcgctgccgtccaaataccaaagttgcattcaagagtttactattttccacaagg |
124 |
Q |
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|||||||||||||||||| || |||| ||||| ||||| | |||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||| |
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| T |
515758 |
agcaaccatcgcatgtgcgtccagaaatctggcacacatgtgctaccgctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaagg |
515659 |
T |
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| Q |
125 |
ccacttagaatatgctt---cttcttcctcctccaatgcttacattcactcccttgatcttcaacgttttcgtcctttcactatctgtatcatctccgct |
221 |
Q |
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||| ||||| | |||| ||||||| ||||||| | || ||| ||||| | ||| ||| ||||||||||||||||| | ||||| |||||||| |
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| T |
515658 |
tcacctagaaaacgcttctccttcttcttcctccattactcacacacactc---ttttctacaaagttttcgtcctttcactctttgtattgtctccgct |
515562 |
T |
|
| Q |
222 |
gttcatctc |
230 |
Q |
| |
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||| ||||| |
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| T |
515561 |
gttgatctc |
515553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 20229263 - 20229405
Alignment:
| Q |
89 |
aaagttgcattcaagagtttactattttccacaaggccacttagaatatgcttcttcttcctcctccaatgcttacattcactcccttgatctt-caacg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||| |
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| T |
20229263 |
aaagttgcattcaagagtttactattttccacaaggccacttagaatatgcttcttcttcctcctccaatgatcactttcactcccttgatcttgcaacg |
20229362 |
T |
|
| Q |
188 |
ttttcgtcctttcactatctgtatcatctccgctgttcatctc |
230 |
Q |
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| T |
20229363 |
ttttcgtcctttcactatccgtatcatttccgcagttgatctc |
20229405 |
T |
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