View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13678_high_2 (Length: 239)
Name: NF13678_high_2
Description: NF13678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13678_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 6606958 - 6606780
Alignment:
| Q |
17 |
aataattacattattttttaagcaaaatttatcccttttgattgcttaatgaatgtcctaaaggtgtttattaggattttcttatttttatatacataaa |
116 |
Q |
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| T |
6606958 |
aataattacactattttttaagcaaaagttatcccttttgattgcttaaagaatgtcctaaaggtgtttattaggattttcttatttttatatacataaa |
6606859 |
T |
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| Q |
117 |
tctttctataacattagtgaagacaagaaaatatgttgtgtactcatcggtatatttgcttttagagttttctatatat |
195 |
Q |
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| T |
6606858 |
tctttctataacattagtgaagacaagaaaatatgttgtgtactcattggtatatttgcttttagagttatatatatat |
6606780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 6606728 - 6606690
Alignment:
| Q |
201 |
tgtgacaactataattattgaaagtgttttctgcacaat |
239 |
Q |
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| T |
6606728 |
tgtgacaactataattattgaaagtgttttctgcacaat |
6606690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 29685177 - 29685380
Alignment:
| Q |
38 |
gcaaaatttatcccttttgattgcttaatgaatgtcctaaaggtgtttattaggattttcttatttttatatacataa--atcttt-ctataacattagt |
134 |
Q |
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| T |
29685177 |
gcaaaagttaccacttttgattgtttaaaaaatttcttaaaggtgtttgttagtattttcttatttt-atgtacataacaatcttttctataacattagt |
29685275 |
T |
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| Q |
135 |
gaagacaagaaaatatgttgtgtactcatcggtatatttgcttttagagttttctatatatgtgtgtgtgacaactataattattgaaagtgttttctgc |
234 |
Q |
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| T |
29685276 |
ggagacaagaaaatatgttgttcactcattgatatatttccttttagagttttctgtgtgtgtatgtgtgacaactataattgttgaaagagttttctcc |
29685375 |
T |
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| Q |
235 |
acaat |
239 |
Q |
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| T |
29685376 |
acaat |
29685380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 29688324 - 29688456
Alignment:
| Q |
54 |
ttgattgcttaatgaatgtcctaaaggtgtttattaggattttcttatttttatatacataa--atctttctataacattagtgaagacaagaaaatatg |
151 |
Q |
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| T |
29688324 |
ttgattgcttaaaaaatgtcctaaagacgcttgttagcattttcttatttt-atatacataacaatatttctataacgttagtggagacaaggaaatatg |
29688422 |
T |
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| Q |
152 |
ttgtgtactcatcggtatatttgcttttagagtt |
185 |
Q |
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| T |
29688423 |
ttgttcactcattgatatatttccttttagagtt |
29688456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 29688486 - 29688530
Alignment:
| Q |
195 |
tgtgtgtgtgacaactataattattgaaagtgttttctgcacaat |
239 |
Q |
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| T |
29688486 |
tgtgtgtgtgacaactataattgttgaaagagttttctccacaat |
29688530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 40887386 - 40887338
Alignment:
| Q |
17 |
aataattacattattttttaagcaaaatttatcccttttgattgcttaa |
65 |
Q |
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| T |
40887386 |
aataaatacattattttttatacaaaatttatctcttttgatttcttaa |
40887338 |
T |
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