View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13678_low_1 (Length: 272)
Name: NF13678_low_1
Description: NF13678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13678_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 19133611 - 19133761
Alignment:
| Q |
100 |
gtatctcccaatgatattttatctcaattcttaataaattcaaatctaaatatatctagacataatattttgatccctcccagttctttttggccagctt |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
19133611 |
gtatatcccaatgatattttatctcaattcttagtagattcatatctaaatatatctagacataatattttgaaccctcctagttc---ttggccagctt |
19133707 |
T |
|
| Q |
200 |
caatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcg |
253 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19133708 |
caacacctagctagggttcaaggtattaaccatcgcatttattttggcagttcg |
19133761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 28402734 - 28402583
Alignment:
| Q |
98 |
tagtatctcccaatgatattttatctcaattcttaataaattcaaatctaaatatatctagacataatattttgatccctcccagttctttttggccagc |
197 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28402734 |
tagtatctcccaatgatattttatctcgattcataataaattaaaatctaaatatacctagacataatattttgaaccctcccagttctttatggccagc |
28402635 |
T |
|
| Q |
198 |
ttcaatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcg |
253 |
Q |
| |
|
|||||||| || | ||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
28402634 |
ttcaatac----cttgggttcaaggtattaaccatcacgtttattttagcagttcg |
28402583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 19931635 - 19931542
Alignment:
| Q |
156 |
tagacataatattttgatccctcccagttctttttggccagcttcaatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcg |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931635 |
tagacataatattttgaaccctcccagttctttttggccagcttcaatac----cttgggttcaaggtattaaccatcgcatttattttggcagttcg |
19931542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University