View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13679_high_2 (Length: 370)

Name: NF13679_high_2
Description: NF13679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13679_high_2
NF13679_high_2
[»] chr2 (26 HSPs)
chr2 (1-370)||(40059199-40059568)
chr2 (97-271)||(40085207-40085370)
chr2 (1-62)||(40085137-40085198)
chr2 (1-54)||(40077227-40077280)
chr2 (241-349)||(35056063-35056171)
chr2 (184-220)||(1830152-1830188)
chr2 (184-220)||(42419906-42419942)
chr2 (184-218)||(7103394-7103428)
chr2 (254-320)||(11344360-11344425)
chr2 (182-220)||(21616579-21616617)
chr2 (184-218)||(23974414-23974448)
chr2 (184-218)||(33197182-33197216)
chr2 (184-217)||(10619141-10619174)
chr2 (184-213)||(37419588-37419617)
chr2 (183-220)||(43985322-43985359)
chr2 (188-220)||(2416426-2416458)
chr2 (184-220)||(8017547-8017583)
chr2 (251-287)||(11513859-11513895)
chr2 (184-220)||(15370244-15370280)
chr2 (184-220)||(18179062-18179098)
chr2 (251-287)||(22681258-22681294)
chr2 (184-220)||(22878211-22878247)
chr2 (184-220)||(27317492-27317528)
chr2 (184-220)||(30331864-30331900)
chr2 (184-220)||(40837358-40837394)
chr2 (184-220)||(41170723-41170759)
[»] chr7 (25 HSPs)
chr7 (109-159)||(35052814-35052864)
chr7 (184-220)||(30812251-30812287)
chr7 (184-220)||(44822071-44822107)
chr7 (251-289)||(23918916-23918954)
chr7 (183-212)||(7612551-7612580)
chr7 (183-220)||(9210934-9210971)
chr7 (254-287)||(28178930-28178963)
chr7 (184-221)||(39551469-39551506)
chr7 (184-221)||(44917447-44917484)
chr7 (251-287)||(1417225-1417261)
chr7 (184-220)||(1418532-1418568)
chr7 (184-220)||(11619079-11619115)
chr7 (184-220)||(19302484-19302520)
chr7 (184-220)||(19624290-19624326)
chr7 (184-220)||(24048653-24048689)
chr7 (184-220)||(28691757-28691793)
chr7 (251-287)||(30456523-30456559)
chr7 (184-220)||(33266407-33266443)
chr7 (184-220)||(33673190-33673226)
chr7 (184-220)||(34464142-34464178)
chr7 (188-220)||(36696345-36696377)
chr7 (251-287)||(38010675-38010711)
chr7 (251-287)||(39591540-39591576)
chr7 (184-220)||(47046029-47046065)
chr7 (184-220)||(47941421-47941457)
[»] chr3 (16 HSPs)
chr3 (182-220)||(26911704-26911742)
chr3 (184-220)||(25447166-25447202)
chr3 (185-220)||(33405114-33405149)
chr3 (251-355)||(4534428-4534530)
chr3 (184-219)||(26990146-26990181)
chr3 (184-218)||(31615481-31615515)
chr3 (109-159)||(53322651-53322700)
chr3 (184-213)||(32582857-32582886)
chr3 (183-220)||(41848636-41848673)
chr3 (184-220)||(3775772-3775808)
chr3 (184-220)||(16072962-16072998)
chr3 (184-220)||(20210849-20210885)
chr3 (184-220)||(20874232-20874268)
chr3 (188-220)||(29114538-29114570)
chr3 (184-220)||(30657399-30657435)
chr3 (184-220)||(36507013-36507049)
[»] chr1 (17 HSPs)
chr1 (183-221)||(17009502-17009540)
chr1 (183-220)||(30257797-30257834)
chr1 (184-220)||(6292605-6292641)
chr1 (269-321)||(23370389-23370440)
chr1 (185-220)||(2522709-2522744)
chr1 (184-213)||(172494-172523)
chr1 (184-213)||(29045854-29045883)
chr1 (183-220)||(29793618-29793655)
chr1 (184-213)||(30014000-30014029)
chr1 (185-213)||(5894113-5894141)
chr1 (184-212)||(23445454-23445482)
chr1 (184-220)||(24334308-24334344)
chr1 (184-220)||(26184856-26184892)
chr1 (251-287)||(27738253-27738289)
chr1 (184-220)||(39976131-39976167)
chr1 (184-220)||(41505787-41505823)
chr1 (184-220)||(51929383-51929419)
[»] chr8 (14 HSPs)
chr8 (184-220)||(38602440-38602476)
chr8 (184-222)||(2606160-2606198)
chr8 (184-222)||(6496812-6496850)
chr8 (187-220)||(6950435-6950468)
chr8 (184-213)||(10727464-10727493)
chr8 (184-220)||(1096603-1096639)
chr8 (184-220)||(2487929-2487965)
chr8 (184-220)||(4560615-4560651)
chr8 (184-220)||(7008711-7008747)
chr8 (184-220)||(14280342-14280378)
chr8 (184-220)||(15180652-15180688)
chr8 (184-220)||(30251375-30251411)
chr8 (184-220)||(30657698-30657734)
chr8 (184-220)||(40728332-40728368)
[»] chr6 (10 HSPs)
chr6 (184-220)||(4308890-4308926)
chr6 (184-220)||(30536886-30536922)
chr6 (189-220)||(7351597-7351628)
chr6 (254-287)||(2205644-2205677)
chr6 (184-220)||(1231220-1231256)
chr6 (251-287)||(7713986-7714022)
chr6 (184-220)||(7785665-7785701)
chr6 (184-220)||(21405075-21405111)
chr6 (184-220)||(31594298-31594334)
chr6 (184-220)||(34404647-34404683)
[»] chr5 (21 HSPs)
chr5 (184-220)||(9107203-9107239)
chr5 (184-220)||(32010058-32010094)
chr5 (184-220)||(32197846-32197882)
chr5 (188-219)||(40111382-40111413)
chr5 (109-159)||(12735614-12735664)
chr5 (109-159)||(12798441-12798491)
chr5 (184-222)||(17369314-17369352)
chr5 (183-220)||(14706204-14706241)
chr5 (184-213)||(40335794-40335823)
chr5 (184-220)||(499652-499688)
chr5 (188-220)||(1084064-1084096)
chr5 (184-220)||(10640066-10640102)
chr5 (183-211)||(12334278-12334306)
chr5 (184-220)||(14331479-14331515)
chr5 (184-216)||(14932413-14932445)
chr5 (184-220)||(34198534-34198570)
chr5 (184-220)||(36796628-36796664)
chr5 (184-220)||(39594920-39594956)
chr5 (184-220)||(41419432-41419468)
chr5 (184-220)||(41534551-41534587)
chr5 (251-287)||(42181165-42181201)
[»] chr4 (22 HSPs)
chr4 (184-220)||(22662172-22662208)
chr4 (184-220)||(22666651-22666687)
chr4 (184-220)||(25571372-25571408)
chr4 (184-220)||(27043751-27043787)
chr4 (184-220)||(41336873-41336909)
chr4 (184-216)||(52315118-52315150)
chr4 (184-215)||(52428782-52428813)
chr4 (184-213)||(3891711-3891740)
chr4 (187-220)||(9720578-9720611)
chr4 (183-220)||(19305039-19305076)
chr4 (183-220)||(37636106-37636143)
chr4 (184-212)||(7367975-7368003)
chr4 (184-220)||(15173224-15173260)
chr4 (184-220)||(17822786-17822822)
chr4 (184-220)||(26590637-26590673)
chr4 (184-220)||(32071976-32072012)
chr4 (184-220)||(41433488-41433524)
chr4 (184-220)||(42403944-42403980)
chr4 (184-220)||(52169941-52169977)
chr4 (251-287)||(54327522-54327558)
chr4 (184-220)||(55437189-55437225)
chr4 (184-220)||(55870263-55870299)
[»] scaffold0110 (1 HSPs)
scaffold0110 (189-225)||(33839-33875)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 40059199 - 40059568
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttttagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40059199 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttctttgagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcatt 40059298  T
Q  101 gcttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgacttattt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  40059299 gcttgcagaaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacatttttagactcgtttggattgacttattt 40059398  T
Q  201 gagtttatctactgacataatctctccaagata-ttaatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatat 299  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059399 gagtttatctactgacataatctctccaagatagataatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatat 40059497  T
Q  300 catatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctact 370  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059498 catatacgtaagaacttatatgttgtaagtgcttaataaagtagtttatccaaacatggtgttgatctact 40059568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 40085207 - 40085370
Alignment:
Q  97 cattgcttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgactt 196  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||              |||||||||||||    
T  40085207 cattgcttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagcatgactgaaca------------agtttggattgactt 40085294  T
Q  197 atttgagtttatctactgacataatctctccaagata-ttaatgaaacataataattatatgaaaacaatatgact 271  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||    
T  40085295 atttgagtttatctactgacataatctctccaagatagataatgaaacatattaactatatgaaaacaatatgact 40085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40085137 - 40085198
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttttagcattg 62  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  40085137 aaggccaggttctctttgcttcatttcttctcttacattcttaccattttctttgagcattg 40085198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40077227 - 40077280
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttt 54  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  40077227 aaggccaggttctctttgcttcatttcttctctcacatttttaccactttcttt 40077280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 35056063 - 35056171
Alignment:
Q  241 aacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaag 340  Q
    |||||| ||||||||||||| || ||||  |||||||||||||||||||||||||| | | ||||  |||| ||||||||||| ||||   ||||| |||    
T  35056063 aacatattaattatatgaaaccagtatggttttgttttatcttttgtaaatagaaacaacgtatatataagcacttatatgctataagcaattaattaag 35056162  T
Q  341 tagtttatc 349  Q
    | |||||||    
T  35056163 ttgtttatc 35056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1830188 - 1830152
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1830188 tttggattgacttatttgagtttatttactgacataa 1830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 42419942 - 42419906
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataa 42419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 7103394 - 7103428
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||||||||||||| ||||||    
T  7103394 tttggattgacttatttgagtttatctattgacat 7103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatat 320  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||| ||| | |||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgt-tatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 21616579 - 21616617
Alignment:
Q  182 catttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21616579 catttggattgacttatttcagtttatccactgacataa 21616617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 23974414 - 23974448
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||| ||||||||||||||||    
T  23974414 tttggattgacttatttgggtttatctactgacat 23974448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 33197182 - 33197216
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||||||||||| ||||||||    
T  33197182 tttggattgacttatttgagtttatcaactgacat 33197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 10619141 - 10619174
Alignment:
Q  184 tttggattgacttatttgagtttatctactgaca 217  Q
    |||||||||||| |||||||||||||||||||||    
T  10619141 tttggattgactcatttgagtttatctactgaca 10619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 37419588 - 37419617
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  37419588 tttggattgacttatttgagtttatctact 37419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 43985359 - 43985322
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  43985359 atttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 2416458 - 2416426
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||| ||||||    
T  2416458 gattgacttatttgagtttatctactaacataa 2416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 8017583 - 8017547
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  8017583 tttggattgacttatttgaggttatctattgacataa 8017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 11513895 - 11513859
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  11513895 ttatatgaaaacaatttgactttattttatcttttgt 11513859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15370244 - 15370280
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  15370244 tttggattgacttatttgagcttatctactggcataa 15370280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 18179098 - 18179062
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  18179098 tttggattgacttatttgagcttatctactaacataa 18179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 22681258 - 22681294
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| || ||||||||||||||||||    
T  22681258 ttatatgaaaacaatttggctttgttttatcttttgt 22681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 22878247 - 22878211
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  22878247 tttggattgacttatttgagcttatccactgacataa 22878211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 27317528 - 27317492
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  27317528 tttggattgacttatttgagcttatctaccgacataa 27317492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30331900 - 30331864
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||| || ||||||||||||||||    
T  30331900 tttggattgacttatttcagcttatctactgacataa 30331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 40837358 - 40837394
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  40837358 tttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41170759 - 41170723
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  41170759 tttggattggcttatttgagtttatctactaacataa 41170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 35052864 - 35052814
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35052864 gaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagca 35052814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30812287 - 30812251
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30812287 tttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 44822107 - 44822071
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44822107 tttggattgacttatttgagtttatctgctgacataa 44822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 23918954 - 23918916
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgtaa 289  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  23918954 ttatatgaaaacaatttgactttattttatcttttgtaa 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 7612580 - 7612551
Alignment:
Q  183 atttggattgacttatttgagtttatctac 212  Q
    ||||||||||||||||||||||||||||||    
T  7612580 atttggattgacttatttgagtttatctac 7612551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9210971 - 9210934
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  9210971 atttggattgacttatttgagcttatctactgatataa 9210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 28178963 - 28178930
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||||||||||| |||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgt 28178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 39551469 - 39551506
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataat 221  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  39551469 tttggattgacttatttgagtttttctacttacataat 39551506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 44917447 - 44917484
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataat 221  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44917447 tttggattgacttatttgagtttatctcccgacataat 44917484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 1417261 - 1417225
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  1417261 ttatatgaaaacaatttgactttattttatcttttgt 1417225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1418568 - 1418532
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  1418568 tttggattgacttatttgagcttatctactggcataa 1418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 11619079 - 11619115
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  11619079 tttggattggcttatttgagcttatctactgacataa 11619115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 19302484 - 19302520
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  19302484 tttgaattgacttatttgagcttatctactgacataa 19302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 19624326 - 19624290
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  19624326 tttggcttgacttatttgagtttatctattgacataa 19624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24048689 - 24048653
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  24048689 tttgaatttacttatttgagtttatctactgacataa 24048653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 28691757 - 28691793
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| || ||||||    
T  28691757 tttggattgacttatttgagtttatctgctaacataa 28691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 30456523 - 30456559
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30456523 ttatatgaaaacaatttgactttattttatcttttgt 30456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 33266407 - 33266443
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  33266407 tttggattgacttatttgagcttatctaccgacataa 33266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 33673226 - 33673190
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  33673226 tttggattgactcatttgagcttatctactgacataa 33673190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 34464142 - 34464178
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34464142 tttggattgatttatttgagtttatctattgacataa 34464178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 36696377 - 36696345
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||| |||||||||||||||    
T  36696377 gattgacttatttgagtgtatctactgacataa 36696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 38010711 - 38010675
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| || ||||||||||||||||||    
T  38010711 ttatatgaaaacaatttggctttgttttatcttttgt 38010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 39591540 - 39591576
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  39591540 ttatatgaaaacaatttgactttattttatcttttgt 39591576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 47046029 - 47046065
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||| | ||||||||||||||||    
T  47046029 tttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 47941457 - 47941421
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||  ||||||||||||||||||||||||||    
T  47941457 tttggattggtttatttgagtttatctactgacataa 47941421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 26911742 - 26911704
Alignment:
Q  182 catttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26911742 catttggattgacttatttgagtttatctactgacataa 26911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 25447166 - 25447202
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  25447166 tttggattgacttatttgagtttatctactgacataa 25447202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 33405114 - 33405149
Alignment:
Q  185 ttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataa 33405149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 4534428 - 4534530
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatcc 350  Q
    |||||| ||||||||  |||||| || |||||||| |  ||| ||||| | |||||||||| |||||||  || |||||||||||| |||| ||||||||    
T  4534428 ttatattaaaacaattcgactttattatatcttttatttatataaataacttatacgtaagcacttata--ctataagtgcttaattaagttgtttatcc 4534525  T
Q  351 aaaca 355  Q
    |||||    
T  4534526 aaaca 4534530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 26990146 - 26990181
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacata 219  Q
    |||||||||||||||||||| |||||||||||||||    
T  26990146 tttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 31615481 - 31615515
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    ||||||||||||||||||||||||||||| |||||    
T  31615481 tttggattgacttatttgagtttatctacggacat 31615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 53322651 - 53322700
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  53322651 gaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagca 53322700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 32582886 - 32582857
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  32582886 tttggattgacttatttgagtttatctact 32582857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 41848636 - 41848673
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  41848636 atttagattgacttatttgagtttatctactaacataa 41848673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 3775772 - 3775808
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  3775772 tttggattgccttatttgagtttatctactggcataa 3775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 16072962 - 16072998
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  16072962 tttggattgacttatttgagcttatctaatgacataa 16072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 20210849 - 20210885
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  20210849 tttggattgatttatttgaggttatctactgacataa 20210885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 20874232 - 20874268
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| || ||||||||    
T  20874232 tttggattgacttatttgagtttatataatgacataa 20874268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 29114570 - 29114538
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||| |||||||||||||||||    
T  29114570 gattgacttatttgactttatctactgacataa 29114538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30657435 - 30657399
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30657435 tttgaattgatttatttgagtttatctactgacataa 30657399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36507013 - 36507049
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  36507013 tttggattggcttatttgagtttatctactgatataa 36507049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 17009502 - 17009540
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataat 221  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17009502 atttgaattgacttatttgagtttatctactgacataat 17009540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 30257834 - 30257797
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30257834 atttggatttacttatttgagtttatctactgacataa 30257797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 6292641 - 6292605
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataa 6292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 23370389 - 23370440
Alignment:
Q  269 actttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatg 321  Q
    ||||||||||||||||||| |||||||||| | |||||||||| |||||||||    
T  23370389 actttgttttatcttttgt-aatagaaatagcttatacgtaagtacttatatg 23370440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 2522744 - 2522709
Alignment:
Q  185 ttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| |||||    
T  2522744 ttggattgacttatttgagtttatctactggcataa 2522709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 172494 - 172523
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  172494 tttggattgacttatttgagtttatctact 172523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 29045854 - 29045883
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  29045854 tttggattgacttatttgagtttatctact 29045883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 29793618 - 29793655
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29793618 atttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 30014000 - 30014029
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  30014000 tttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 5894113 - 5894141
Alignment:
Q  185 ttggattgacttatttgagtttatctact 213  Q
    |||||||||||||||||||||||||||||    
T  5894113 ttggattgacttatttgagtttatctact 5894141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 23445482 - 23445454
Alignment:
Q  184 tttggattgacttatttgagtttatctac 212  Q
    |||||||||||||||||||||||||||||    
T  23445482 tttggattgacttatttgagtttatctac 23445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24334344 - 24334308
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||| || |||||||    
T  24334344 tttggattgacttatttgagtttatcaacggacataa 24334308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 26184892 - 26184856
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26184892 tttggattgacttatttgagtttttctattgacataa 26184856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 27738253 - 27738289
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  27738253 ttatatgaaaacaatttgactttattttatcttttgt 27738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 39976131 - 39976167
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  39976131 tttggactgacttatttgagattatctactgacataa 39976167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41505823 - 41505787
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  41505823 tttggattggcttatttgagcttatctactgacataa 41505787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 51929383 - 51929419
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataa 51929419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 38602476 - 38602440
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataa 38602440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 2606198 - 2606160
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatc 2606160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 6496812 - 6496850
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatc 6496850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 6950468 - 6950435
Alignment:
Q  187 ggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| |||||    
T  6950468 ggattgacttatttgagtttatctactggcataa 6950435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 10727493 - 10727464
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  10727493 tttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1096639 - 1096603
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| || ||||||||    
T  1096639 tttggattgacttatttgagtttatttagtgacataa 1096603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 2487929 - 2487965
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  2487929 tttggattggcttatttgagttcatctactgacataa 2487965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 4560651 - 4560615
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  4560651 tttggattgacttatttgagcttatctattgacataa 4560615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 7008747 - 7008711
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||||||| |||||    
T  7008747 tttgaattgacttatttgagtttatctactggcataa 7008711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 14280342 - 14280378
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  14280342 tttggattgacttatttgattttatctactggcataa 14280378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15180688 - 15180652
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  15180688 tttggattggcttatttgagtttatctactgccataa 15180652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30251375 - 30251411
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  30251375 tttggattggcttatttgagcttatctactgacataa 30251411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30657698 - 30657734
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  30657698 tttggatcgacttatttgagtttatctaatgacataa 30657734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 40728332 - 40728368
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  40728332 tttggattgacttatttgagtctatctactggcataa 40728368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 4308926 - 4308890
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataa 4308890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30536886 - 30536922
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30536886 tttggattgacttatttgagtttatctacttacataa 30536922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 7351597 - 7351628
Alignment:
Q  189 attgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||||||||    
T  7351597 attgacttatttgagtttatctactgacataa 7351628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 2205644 - 2205677
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||| |||||||||||||||||||||    
T  2205644 tatgaaaacaatttgactttgttttatcttttgt 2205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 1231220 - 1231256
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  1231220 tttggattgatttatttgagtttatctattgacataa 1231256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 7714022 - 7713986
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7714022 ttatatgaaaacaatttgactttattttatcttttgt 7713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 7785665 - 7785701
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  7785665 tttggattgtcttatttgaatttatctactgacataa 7785701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 21405075 - 21405111
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||| |||||||||||    
T  21405075 tttggattgacttatttgagcttatatactgacataa 21405111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 31594298 - 31594334
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  31594298 tttggattgacttatttgtgtttatctacttacataa 31594334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 34404647 - 34404683
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34404647 tttggatttacttatttgagtttatcaactgacataa 34404683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 9107239 - 9107203
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9107239 tttggattgacttatttgagtttatctagtgacataa 9107203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32010094 - 32010058
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32010094 tttggattgacttatttgagtttatctactcacataa 32010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32197882 - 32197846
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32197882 tttggattgacttttttgagtttatctactgacataa 32197846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 40111413 - 40111382
Alignment:
Q  188 gattgacttatttgagtttatctactgacata 219  Q
    ||||||||||||||||||||||||||||||||    
T  40111413 gattgacttatttgagtttatctactgacata 40111382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12735664 - 12735614
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12735664 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12735614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12798491 - 12798441
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12798491 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 17369352 - 17369314
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  17369352 tttggattgacttatttgaacttatctactgacataatc 17369314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 14706204 - 14706241
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  14706204 atttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 40335794 - 40335823
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  40335794 tttggattgacttatttgagtttatctact 40335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 499652 - 499688
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  499652 tttggattgacttatttgagcttacctactgacataa 499688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 1084064 - 1084096
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| |||||||||||    
T  1084064 gattgacttatttgagtttatttactgacataa 1084096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10640102 - 10640066
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||  |||||||||||||||||||||||||||    
T  10640102 tttggattagcttatttgagtttatctactgacataa 10640066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 12334278 - 12334306
Alignment:
Q  183 atttggattgacttatttgagtttatcta 211  Q
    |||||||||||||||||||||||||||||    
T  12334278 atttggattgacttatttgagtttatcta 12334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 14331515 - 14331479
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  14331515 tttggattgacttatttgagcttatctactgtcataa 14331479  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 14932445 - 14932413
Alignment:
Q  184 tttggattgacttatttgagtttatctactgac 216  Q
    |||||||||||||||||||| ||||||||||||    
T  14932445 tttggattgacttatttgagcttatctactgac 14932413  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 34198570 - 34198534
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  34198570 tttggattgacttatttgagtttatttactaacataa 34198534  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36796628 - 36796664
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  36796628 tttggattgacttatttgagcttatctaatgacataa 36796664  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 39594956 - 39594920
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  39594956 tttggattgacttatttgagcttatctaccgacataa 39594920  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41419468 - 41419432
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| | ||||||||||||||    
T  41419468 tttggattgacttatttgagctaatctactgacataa 41419432  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41534587 - 41534551
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| | ||||||||||||||    
T  41534587 tttggattgacttatttgagctaatctactgacataa 41534551  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 42181165 - 42181201
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||| || |||||||||||||||||||||    
T  42181165 ttatatgaaaaccatttgactttgttttatcttttgt 42181201  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22662172 - 22662208
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22662172 tttggattgacttatttgagtttatctactaacataa 22662208  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22666651 - 22666687
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22666651 tttggattgacttatttgagtttatctactaacataa 22666687  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 25571408 - 25571372
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25571408 tttggattggcttatttgagtttatctactgacataa 25571372  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 27043751 - 27043787
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27043751 tttggattgacttatttgagcttatctactgacataa 27043787  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41336909 - 41336873
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41336909 tttggattgacttatttgagtttatctactcacataa 41336873  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 52315118 - 52315150
Alignment:
Q  184 tttggattgacttatttgagtttatctactgac 216  Q
    |||||||||||||||||||||||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgac 52315150  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 52428813 - 52428782
Alignment:
Q  184 tttggattgacttatttgagtttatctactga 215  Q
    ||||||||||||||||||||||||||||||||    
T  52428813 tttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 3891740 - 3891711
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  3891740 tttggattgacttatttgagtttatctact 3891711  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
Q  187 ggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| ||||||    
T  9720578 ggattgacttatttgagtttatctactaacataa 9720611  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 19305076 - 19305039
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19305076 atttggattgacttatttgagattatctattgacataa 19305039  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 37636106 - 37636143
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  37636106 atttggattgatttatttgagtttatctactaacataa 37636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 7367975 - 7368003
Alignment:
Q  184 tttggattgacttatttgagtttatctac 212  Q
    |||||||||||||||||||||||||||||    
T  7367975 tttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15173224 - 15173260
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||  ||||||||||||||||    
T  15173224 tttggattgacttatttgaacttatctactgacataa 15173260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 17822786 - 17822822
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  17822786 tttggattaacttatttgagcttatctactgacataa 17822822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 26590673 - 26590637
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26590673 tttggattgaattatttgagtttatctacttacataa 26590637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32072012 - 32071976
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  32072012 tttggactgacttatttgagtttatctattgacataa 32071976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41433524 - 41433488
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||| |||||||||    
T  41433524 tttgaattgacttatttgagtttatctcctgacataa 41433488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 42403944 - 42403980
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  42403944 tttggattgacttatttgagcttatcaactgacataa 42403980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 52169941 - 52169977
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| | ||||||    
T  52169941 tttggattgacttatttgagtttatctatttacataa 52169977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 54327522 - 54327558
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||| | |||||||||||||||||||||    
T  54327522 ttatatgaaaacagtttgactttgttttatcttttgt 54327558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 55437225 - 55437189
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  55437225 tttggattggcttatttgagtttatctactgccataa 55437189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 55870263 - 55870299
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  55870263 tttggattaacttatttgagtttatctaatgacataa 55870299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 33839 - 33875
Alignment:
Q  189 attgacttatttgagtttatctactgacataatctct 225  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  33839 attgacttatttgaatttatctactgacataagctct 33875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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