View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13679_low_2 (Length: 593)
Name: NF13679_low_2
Description: NF13679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13679_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 12 - 575
Target Start/End: Original strand, 34859891 - 34860454
Alignment:
| Q |
12 |
catcatcaaggttcaaaccaacaccctgcttattacagagaaaagaacaaaagatgagaacactgaagacagacggcggaaagaattaacactcattgaa |
111 |
Q |
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| T |
34859891 |
catcatcaaggttcaaaccaacaccctgcttattacagagaaaagaacaaaagatgagaacactgaagacagacggcggaaagaattaacactcattgaa |
34859990 |
T |
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| Q |
112 |
aagaaagcaaattaaattaacgtatatgcacaaaggaatgatctgtcaaaccaataagataagctgcatcatggacacccacatgtaaatgcgtgtgaaa |
211 |
Q |
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| T |
34859991 |
aagaaagcaaattaaattaacgtatatgcacaaaggaatgatctgtcaaaccaataagataagctgcatcatggacacccacatgtaaatgcgtgtgaaa |
34860090 |
T |
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| Q |
212 |
tgtcaagctacaattaatggtattatcaatatgctcagaccgaccttgagaaagaggcctagttgcatccttccaccgtgctttaaatgatggtcctctt |
311 |
Q |
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| T |
34860091 |
tgtcaagctacaattaatggtattatcaatatgctcagaccgaccttgagaaagaggcctagttgcatccttccaccgtgctttaaatgatggtcctctt |
34860190 |
T |
|
| Q |
312 |
tcagctgcataagggtggcataaatcaagagtcaggacagatgagacaagaaaaggacaaaatgaagactcgttataaaagatgagttaagaagnnnnnn |
411 |
Q |
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| T |
34860191 |
tcagctgcacaagggtggcataaatcaagagtcaggacagatgagacaagaaaaggacaaaatgaagactcgttataaaagatgagttaagaagaaaaaa |
34860290 |
T |
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| Q |
412 |
nngaaattaaaaatgaactgcagagtgagaattgagaaacacaatatatggatcgtagtttatgactgatctcttaccttatcaaacaggtgacgcatgc |
511 |
Q |
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| T |
34860291 |
aagaaattaaaaatgaactgcagagtgagaattgagaaacacaatatatggatcgtagtttatgactgatctcttaccttatcaaacaggtgacgcatgc |
34860390 |
T |
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| Q |
512 |
acagaggaaatgagctcttggcaacttgatcaatgtcttttaaagatatctcagcgtactctct |
575 |
Q |
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| T |
34860391 |
acagaggaaatgagctcttggcaacttgatcaatgtcttttaaagatatctcagcgtactctct |
34860454 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 542
Target Start/End: Complemental strand, 40273105 - 40273014
Alignment:
| Q |
451 |
cacaatatatggatcgtagtttatgactgatctcttaccttatcaaacaggtgacgcatgcacagaggaaatgagctcttggcaacttgatc |
542 |
Q |
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| T |
40273105 |
cacaatatatggatcatagtttatgattgatctctagccttatcaaacaagtgatgtgtgtaccaaggaaatgagttattggcaacttgatc |
40273014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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