View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13679_low_3 (Length: 370)

Name: NF13679_low_3
Description: NF13679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13679_low_3
NF13679_low_3
[»] chr2 (26 HSPs)
chr2 (1-370)||(40059199-40059568)
chr2 (97-271)||(40085207-40085370)
chr2 (1-62)||(40085137-40085198)
chr2 (1-54)||(40077227-40077280)
chr2 (241-349)||(35056063-35056171)
chr2 (184-220)||(1830152-1830188)
chr2 (184-220)||(42419906-42419942)
chr2 (184-218)||(7103394-7103428)
chr2 (254-320)||(11344360-11344425)
chr2 (182-220)||(21616579-21616617)
chr2 (184-218)||(23974414-23974448)
chr2 (184-218)||(33197182-33197216)
chr2 (184-217)||(10619141-10619174)
chr2 (184-213)||(37419588-37419617)
chr2 (183-220)||(43985322-43985359)
chr2 (188-220)||(2416426-2416458)
chr2 (184-220)||(8017547-8017583)
chr2 (251-287)||(11513859-11513895)
chr2 (184-220)||(15370244-15370280)
chr2 (184-220)||(18179062-18179098)
chr2 (251-287)||(22681258-22681294)
chr2 (184-220)||(22878211-22878247)
chr2 (184-220)||(27317492-27317528)
chr2 (184-220)||(30331864-30331900)
chr2 (184-220)||(40837358-40837394)
chr2 (184-220)||(41170723-41170759)
[»] chr7 (25 HSPs)
chr7 (109-159)||(35052814-35052864)
chr7 (184-220)||(30812251-30812287)
chr7 (184-220)||(44822071-44822107)
chr7 (251-289)||(23918916-23918954)
chr7 (183-212)||(7612551-7612580)
chr7 (183-220)||(9210934-9210971)
chr7 (254-287)||(28178930-28178963)
chr7 (184-221)||(39551469-39551506)
chr7 (184-221)||(44917447-44917484)
chr7 (251-287)||(1417225-1417261)
chr7 (184-220)||(1418532-1418568)
chr7 (184-220)||(11619079-11619115)
chr7 (184-220)||(19302484-19302520)
chr7 (184-220)||(19624290-19624326)
chr7 (184-220)||(24048653-24048689)
chr7 (184-220)||(28691757-28691793)
chr7 (251-287)||(30456523-30456559)
chr7 (184-220)||(33266407-33266443)
chr7 (184-220)||(33673190-33673226)
chr7 (184-220)||(34464142-34464178)
chr7 (188-220)||(36696345-36696377)
chr7 (251-287)||(38010675-38010711)
chr7 (251-287)||(39591540-39591576)
chr7 (184-220)||(47046029-47046065)
chr7 (184-220)||(47941421-47941457)
[»] chr3 (16 HSPs)
chr3 (182-220)||(26911704-26911742)
chr3 (184-220)||(25447166-25447202)
chr3 (185-220)||(33405114-33405149)
chr3 (251-355)||(4534428-4534530)
chr3 (184-219)||(26990146-26990181)
chr3 (184-218)||(31615481-31615515)
chr3 (109-159)||(53322651-53322700)
chr3 (184-213)||(32582857-32582886)
chr3 (183-220)||(41848636-41848673)
chr3 (184-220)||(3775772-3775808)
chr3 (184-220)||(16072962-16072998)
chr3 (184-220)||(20210849-20210885)
chr3 (184-220)||(20874232-20874268)
chr3 (188-220)||(29114538-29114570)
chr3 (184-220)||(30657399-30657435)
chr3 (184-220)||(36507013-36507049)
[»] chr1 (17 HSPs)
chr1 (183-221)||(17009502-17009540)
chr1 (183-220)||(30257797-30257834)
chr1 (184-220)||(6292605-6292641)
chr1 (269-321)||(23370389-23370440)
chr1 (185-220)||(2522709-2522744)
chr1 (184-213)||(172494-172523)
chr1 (184-213)||(29045854-29045883)
chr1 (183-220)||(29793618-29793655)
chr1 (184-213)||(30014000-30014029)
chr1 (185-213)||(5894113-5894141)
chr1 (184-212)||(23445454-23445482)
chr1 (184-220)||(24334308-24334344)
chr1 (184-220)||(26184856-26184892)
chr1 (251-287)||(27738253-27738289)
chr1 (184-220)||(39976131-39976167)
chr1 (184-220)||(41505787-41505823)
chr1 (184-220)||(51929383-51929419)
[»] chr8 (14 HSPs)
chr8 (184-220)||(38602440-38602476)
chr8 (184-222)||(2606160-2606198)
chr8 (184-222)||(6496812-6496850)
chr8 (187-220)||(6950435-6950468)
chr8 (184-213)||(10727464-10727493)
chr8 (184-220)||(1096603-1096639)
chr8 (184-220)||(2487929-2487965)
chr8 (184-220)||(4560615-4560651)
chr8 (184-220)||(7008711-7008747)
chr8 (184-220)||(14280342-14280378)
chr8 (184-220)||(15180652-15180688)
chr8 (184-220)||(30251375-30251411)
chr8 (184-220)||(30657698-30657734)
chr8 (184-220)||(40728332-40728368)
[»] chr6 (10 HSPs)
chr6 (184-220)||(4308890-4308926)
chr6 (184-220)||(30536886-30536922)
chr6 (189-220)||(7351597-7351628)
chr6 (254-287)||(2205644-2205677)
chr6 (184-220)||(1231220-1231256)
chr6 (251-287)||(7713986-7714022)
chr6 (184-220)||(7785665-7785701)
chr6 (184-220)||(21405075-21405111)
chr6 (184-220)||(31594298-31594334)
chr6 (184-220)||(34404647-34404683)
[»] chr5 (21 HSPs)
chr5 (184-220)||(9107203-9107239)
chr5 (184-220)||(32010058-32010094)
chr5 (184-220)||(32197846-32197882)
chr5 (188-219)||(40111382-40111413)
chr5 (109-159)||(12735614-12735664)
chr5 (109-159)||(12798441-12798491)
chr5 (184-222)||(17369314-17369352)
chr5 (183-220)||(14706204-14706241)
chr5 (184-213)||(40335794-40335823)
chr5 (184-220)||(499652-499688)
chr5 (188-220)||(1084064-1084096)
chr5 (184-220)||(10640066-10640102)
chr5 (183-211)||(12334278-12334306)
chr5 (184-220)||(14331479-14331515)
chr5 (184-216)||(14932413-14932445)
chr5 (184-220)||(34198534-34198570)
chr5 (184-220)||(36796628-36796664)
chr5 (184-220)||(39594920-39594956)
chr5 (184-220)||(41419432-41419468)
chr5 (184-220)||(41534551-41534587)
chr5 (251-287)||(42181165-42181201)
[»] chr4 (22 HSPs)
chr4 (184-220)||(22662172-22662208)
chr4 (184-220)||(22666651-22666687)
chr4 (184-220)||(25571372-25571408)
chr4 (184-220)||(27043751-27043787)
chr4 (184-220)||(41336873-41336909)
chr4 (184-216)||(52315118-52315150)
chr4 (184-215)||(52428782-52428813)
chr4 (184-213)||(3891711-3891740)
chr4 (187-220)||(9720578-9720611)
chr4 (183-220)||(19305039-19305076)
chr4 (183-220)||(37636106-37636143)
chr4 (184-212)||(7367975-7368003)
chr4 (184-220)||(15173224-15173260)
chr4 (184-220)||(17822786-17822822)
chr4 (184-220)||(26590637-26590673)
chr4 (184-220)||(32071976-32072012)
chr4 (184-220)||(41433488-41433524)
chr4 (184-220)||(42403944-42403980)
chr4 (184-220)||(52169941-52169977)
chr4 (251-287)||(54327522-54327558)
chr4 (184-220)||(55437189-55437225)
chr4 (184-220)||(55870263-55870299)
[»] scaffold0110 (1 HSPs)
scaffold0110 (189-225)||(33839-33875)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 40059199 - 40059568
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttttagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40059199 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttctttgagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcatt 40059298  T
Q  101 gcttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgacttattt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  40059299 gcttgcagaaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacatttttagactcgtttggattgacttattt 40059398  T
Q  201 gagtttatctactgacataatctctccaagata-ttaatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatat 299  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059399 gagtttatctactgacataatctctccaagatagataatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatat 40059497  T
Q  300 catatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctact 370  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059498 catatacgtaagaacttatatgttgtaagtgcttaataaagtagtttatccaaacatggtgttgatctact 40059568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 40085207 - 40085370
Alignment:
Q  97 cattgcttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgactt 196  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||              |||||||||||||    
T  40085207 cattgcttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagcatgactgaaca------------agtttggattgactt 40085294  T
Q  197 atttgagtttatctactgacataatctctccaagata-ttaatgaaacataataattatatgaaaacaatatgact 271  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||    
T  40085295 atttgagtttatctactgacataatctctccaagatagataatgaaacatattaactatatgaaaacaatatgact 40085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40085137 - 40085198
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttttagcattg 62  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  40085137 aaggccaggttctctttgcttcatttcttctcttacattcttaccattttctttgagcattg 40085198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40077227 - 40077280
Alignment:
Q  1 aaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttt 54  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  40077227 aaggccaggttctctttgcttcatttcttctctcacatttttaccactttcttt 40077280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 35056063 - 35056171
Alignment:
Q  241 aacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaag 340  Q
    |||||| ||||||||||||| || ||||  |||||||||||||||||||||||||| | | ||||  |||| ||||||||||| ||||   ||||| |||    
T  35056063 aacatattaattatatgaaaccagtatggttttgttttatcttttgtaaatagaaacaacgtatatataagcacttatatgctataagcaattaattaag 35056162  T
Q  341 tagtttatc 349  Q
    | |||||||    
T  35056163 ttgtttatc 35056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1830188 - 1830152
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1830188 tttggattgacttatttgagtttatttactgacataa 1830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 42419942 - 42419906
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataa 42419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 7103394 - 7103428
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||||||||||||| ||||||    
T  7103394 tttggattgacttatttgagtttatctattgacat 7103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatat 320  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||| ||| | |||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgt-tatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 21616579 - 21616617
Alignment:
Q  182 catttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21616579 catttggattgacttatttcagtttatccactgacataa 21616617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 23974414 - 23974448
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||| ||||||||||||||||    
T  23974414 tttggattgacttatttgggtttatctactgacat 23974448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 33197182 - 33197216
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    |||||||||||||||||||||||||| ||||||||    
T  33197182 tttggattgacttatttgagtttatcaactgacat 33197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 10619141 - 10619174
Alignment:
Q  184 tttggattgacttatttgagtttatctactgaca 217  Q
    |||||||||||| |||||||||||||||||||||    
T  10619141 tttggattgactcatttgagtttatctactgaca 10619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 37419588 - 37419617
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  37419588 tttggattgacttatttgagtttatctact 37419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 43985359 - 43985322
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  43985359 atttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 2416458 - 2416426
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||| ||||||    
T  2416458 gattgacttatttgagtttatctactaacataa 2416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 8017583 - 8017547
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  8017583 tttggattgacttatttgaggttatctattgacataa 8017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 11513895 - 11513859
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  11513895 ttatatgaaaacaatttgactttattttatcttttgt 11513859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15370244 - 15370280
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  15370244 tttggattgacttatttgagcttatctactggcataa 15370280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 18179098 - 18179062
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  18179098 tttggattgacttatttgagcttatctactaacataa 18179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 22681258 - 22681294
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| || ||||||||||||||||||    
T  22681258 ttatatgaaaacaatttggctttgttttatcttttgt 22681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 22878247 - 22878211
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  22878247 tttggattgacttatttgagcttatccactgacataa 22878211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 27317528 - 27317492
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  27317528 tttggattgacttatttgagcttatctaccgacataa 27317492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30331900 - 30331864
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||| || ||||||||||||||||    
T  30331900 tttggattgacttatttcagcttatctactgacataa 30331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 40837358 - 40837394
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  40837358 tttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41170759 - 41170723
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  41170759 tttggattggcttatttgagtttatctactaacataa 41170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 35052864 - 35052814
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35052864 gaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagca 35052814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30812287 - 30812251
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30812287 tttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 44822107 - 44822071
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44822107 tttggattgacttatttgagtttatctgctgacataa 44822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 23918954 - 23918916
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgtaa 289  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  23918954 ttatatgaaaacaatttgactttattttatcttttgtaa 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 7612580 - 7612551
Alignment:
Q  183 atttggattgacttatttgagtttatctac 212  Q
    ||||||||||||||||||||||||||||||    
T  7612580 atttggattgacttatttgagtttatctac 7612551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9210971 - 9210934
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  9210971 atttggattgacttatttgagcttatctactgatataa 9210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 28178963 - 28178930
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||||||||||| |||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgt 28178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 39551469 - 39551506
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataat 221  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  39551469 tttggattgacttatttgagtttttctacttacataat 39551506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 44917447 - 44917484
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataat 221  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44917447 tttggattgacttatttgagtttatctcccgacataat 44917484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 1417261 - 1417225
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  1417261 ttatatgaaaacaatttgactttattttatcttttgt 1417225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1418568 - 1418532
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  1418568 tttggattgacttatttgagcttatctactggcataa 1418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 11619079 - 11619115
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  11619079 tttggattggcttatttgagcttatctactgacataa 11619115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 19302484 - 19302520
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  19302484 tttgaattgacttatttgagcttatctactgacataa 19302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 19624326 - 19624290
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  19624326 tttggcttgacttatttgagtttatctattgacataa 19624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24048689 - 24048653
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  24048689 tttgaatttacttatttgagtttatctactgacataa 24048653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 28691757 - 28691793
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| || ||||||    
T  28691757 tttggattgacttatttgagtttatctgctaacataa 28691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 30456523 - 30456559
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30456523 ttatatgaaaacaatttgactttattttatcttttgt 30456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 33266407 - 33266443
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  33266407 tttggattgacttatttgagcttatctaccgacataa 33266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 33673226 - 33673190
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  33673226 tttggattgactcatttgagcttatctactgacataa 33673190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 34464142 - 34464178
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34464142 tttggattgatttatttgagtttatctattgacataa 34464178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 36696377 - 36696345
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||| |||||||||||||||    
T  36696377 gattgacttatttgagtgtatctactgacataa 36696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 38010711 - 38010675
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| || ||||||||||||||||||    
T  38010711 ttatatgaaaacaatttggctttgttttatcttttgt 38010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 39591540 - 39591576
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  39591540 ttatatgaaaacaatttgactttattttatcttttgt 39591576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 47046029 - 47046065
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||| | ||||||||||||||||    
T  47046029 tttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 47941457 - 47941421
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||  ||||||||||||||||||||||||||    
T  47941457 tttggattggtttatttgagtttatctactgacataa 47941421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 26911742 - 26911704
Alignment:
Q  182 catttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26911742 catttggattgacttatttgagtttatctactgacataa 26911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 25447166 - 25447202
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  25447166 tttggattgacttatttgagtttatctactgacataa 25447202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 33405114 - 33405149
Alignment:
Q  185 ttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataa 33405149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 4534428 - 4534530
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatcc 350  Q
    |||||| ||||||||  |||||| || |||||||| |  ||| ||||| | |||||||||| |||||||  || |||||||||||| |||| ||||||||    
T  4534428 ttatattaaaacaattcgactttattatatcttttatttatataaataacttatacgtaagcacttata--ctataagtgcttaattaagttgtttatcc 4534525  T
Q  351 aaaca 355  Q
    |||||    
T  4534526 aaaca 4534530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 26990146 - 26990181
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacata 219  Q
    |||||||||||||||||||| |||||||||||||||    
T  26990146 tttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 31615481 - 31615515
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacat 218  Q
    ||||||||||||||||||||||||||||| |||||    
T  31615481 tttggattgacttatttgagtttatctacggacat 31615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 53322651 - 53322700
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  53322651 gaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagca 53322700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 32582886 - 32582857
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  32582886 tttggattgacttatttgagtttatctact 32582857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 41848636 - 41848673
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  41848636 atttagattgacttatttgagtttatctactaacataa 41848673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 3775772 - 3775808
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  3775772 tttggattgccttatttgagtttatctactggcataa 3775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 16072962 - 16072998
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  16072962 tttggattgacttatttgagcttatctaatgacataa 16072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 20210849 - 20210885
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  20210849 tttggattgatttatttgaggttatctactgacataa 20210885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 20874232 - 20874268
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| || ||||||||    
T  20874232 tttggattgacttatttgagtttatataatgacataa 20874268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 29114570 - 29114538
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||| |||||||||||||||||    
T  29114570 gattgacttatttgactttatctactgacataa 29114538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30657435 - 30657399
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30657435 tttgaattgatttatttgagtttatctactgacataa 30657399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36507013 - 36507049
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  36507013 tttggattggcttatttgagtttatctactgatataa 36507049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 17009502 - 17009540
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataat 221  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17009502 atttgaattgacttatttgagtttatctactgacataat 17009540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 30257834 - 30257797
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30257834 atttggatttacttatttgagtttatctactgacataa 30257797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 6292641 - 6292605
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataa 6292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 23370389 - 23370440
Alignment:
Q  269 actttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatg 321  Q
    ||||||||||||||||||| |||||||||| | |||||||||| |||||||||    
T  23370389 actttgttttatcttttgt-aatagaaatagcttatacgtaagtacttatatg 23370440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 2522744 - 2522709
Alignment:
Q  185 ttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| |||||    
T  2522744 ttggattgacttatttgagtttatctactggcataa 2522709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 172494 - 172523
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  172494 tttggattgacttatttgagtttatctact 172523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 29045854 - 29045883
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  29045854 tttggattgacttatttgagtttatctact 29045883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 29793618 - 29793655
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29793618 atttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 30014000 - 30014029
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  30014000 tttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 5894113 - 5894141
Alignment:
Q  185 ttggattgacttatttgagtttatctact 213  Q
    |||||||||||||||||||||||||||||    
T  5894113 ttggattgacttatttgagtttatctact 5894141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 23445482 - 23445454
Alignment:
Q  184 tttggattgacttatttgagtttatctac 212  Q
    |||||||||||||||||||||||||||||    
T  23445482 tttggattgacttatttgagtttatctac 23445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24334344 - 24334308
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||| || |||||||    
T  24334344 tttggattgacttatttgagtttatcaacggacataa 24334308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 26184892 - 26184856
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26184892 tttggattgacttatttgagtttttctattgacataa 26184856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 27738253 - 27738289
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  27738253 ttatatgaaaacaatttgactttattttatcttttgt 27738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 39976131 - 39976167
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  39976131 tttggactgacttatttgagattatctactgacataa 39976167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41505823 - 41505787
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  41505823 tttggattggcttatttgagcttatctactgacataa 41505787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 51929383 - 51929419
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataa 51929419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 38602476 - 38602440
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataa 38602440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 2606198 - 2606160
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatc 2606160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 6496812 - 6496850
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatc 6496850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 6950468 - 6950435
Alignment:
Q  187 ggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| |||||    
T  6950468 ggattgacttatttgagtttatctactggcataa 6950435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 10727493 - 10727464
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  10727493 tttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1096639 - 1096603
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| || ||||||||    
T  1096639 tttggattgacttatttgagtttatttagtgacataa 1096603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 2487929 - 2487965
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  2487929 tttggattggcttatttgagttcatctactgacataa 2487965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 4560651 - 4560615
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  4560651 tttggattgacttatttgagcttatctattgacataa 4560615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 7008747 - 7008711
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||||||| |||||    
T  7008747 tttgaattgacttatttgagtttatctactggcataa 7008711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 14280342 - 14280378
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  14280342 tttggattgacttatttgattttatctactggcataa 14280378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15180688 - 15180652
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  15180688 tttggattggcttatttgagtttatctactgccataa 15180652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30251375 - 30251411
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  30251375 tttggattggcttatttgagcttatctactgacataa 30251411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30657698 - 30657734
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  30657698 tttggatcgacttatttgagtttatctaatgacataa 30657734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 40728332 - 40728368
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  40728332 tttggattgacttatttgagtctatctactggcataa 40728368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 4308926 - 4308890
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataa 4308890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 30536886 - 30536922
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30536886 tttggattgacttatttgagtttatctacttacataa 30536922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 7351597 - 7351628
Alignment:
Q  189 attgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||||||||    
T  7351597 attgacttatttgagtttatctactgacataa 7351628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 2205644 - 2205677
Alignment:
Q  254 tatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||| |||||||||||||||||||||    
T  2205644 tatgaaaacaatttgactttgttttatcttttgt 2205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 1231220 - 1231256
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  1231220 tttggattgatttatttgagtttatctattgacataa 1231256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 7714022 - 7713986
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7714022 ttatatgaaaacaatttgactttattttatcttttgt 7713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 7785665 - 7785701
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  7785665 tttggattgtcttatttgaatttatctactgacataa 7785701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 21405075 - 21405111
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||| |||||||||||    
T  21405075 tttggattgacttatttgagcttatatactgacataa 21405111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 31594298 - 31594334
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  31594298 tttggattgacttatttgtgtttatctacttacataa 31594334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 34404647 - 34404683
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34404647 tttggatttacttatttgagtttatcaactgacataa 34404683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 9107239 - 9107203
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9107239 tttggattgacttatttgagtttatctagtgacataa 9107203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32010094 - 32010058
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32010094 tttggattgacttatttgagtttatctactcacataa 32010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32197882 - 32197846
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32197882 tttggattgacttttttgagtttatctactgacataa 32197846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 40111413 - 40111382
Alignment:
Q  188 gattgacttatttgagtttatctactgacata 219  Q
    ||||||||||||||||||||||||||||||||    
T  40111413 gattgacttatttgagtttatctactgacata 40111382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12735664 - 12735614
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12735664 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12735614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12798491 - 12798441
Alignment:
Q  109 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 159  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12798491 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 17369352 - 17369314
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataatc 222  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  17369352 tttggattgacttatttgaacttatctactgacataatc 17369314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 14706204 - 14706241
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  14706204 atttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 40335794 - 40335823
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  40335794 tttggattgacttatttgagtttatctact 40335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 499652 - 499688
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  499652 tttggattgacttatttgagcttacctactgacataa 499688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 1084064 - 1084096
Alignment:
Q  188 gattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| |||||||||||    
T  1084064 gattgacttatttgagtttatttactgacataa 1084096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10640102 - 10640066
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||  |||||||||||||||||||||||||||    
T  10640102 tttggattagcttatttgagtttatctactgacataa 10640066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 12334278 - 12334306
Alignment:
Q  183 atttggattgacttatttgagtttatcta 211  Q
    |||||||||||||||||||||||||||||    
T  12334278 atttggattgacttatttgagtttatcta 12334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 14331515 - 14331479
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||||| |||||    
T  14331515 tttggattgacttatttgagcttatctactgtcataa 14331479  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 14932445 - 14932413
Alignment:
Q  184 tttggattgacttatttgagtttatctactgac 216  Q
    |||||||||||||||||||| ||||||||||||    
T  14932445 tttggattgacttatttgagcttatctactgac 14932413  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 34198570 - 34198534
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  34198570 tttggattgacttatttgagtttatttactaacataa 34198534  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36796628 - 36796664
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  36796628 tttggattgacttatttgagcttatctaatgacataa 36796664  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 39594956 - 39594920
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| |||||||| |||||||    
T  39594956 tttggattgacttatttgagcttatctaccgacataa 39594920  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41419468 - 41419432
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| | ||||||||||||||    
T  41419468 tttggattgacttatttgagctaatctactgacataa 41419432  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41534587 - 41534551
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| | ||||||||||||||    
T  41534587 tttggattgacttatttgagctaatctactgacataa 41534551  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 42181165 - 42181201
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    |||||||||||| || |||||||||||||||||||||    
T  42181165 ttatatgaaaaccatttgactttgttttatcttttgt 42181201  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22662172 - 22662208
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22662172 tttggattgacttatttgagtttatctactaacataa 22662208  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22666651 - 22666687
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22666651 tttggattgacttatttgagtttatctactaacataa 22666687  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 25571408 - 25571372
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25571408 tttggattggcttatttgagtttatctactgacataa 25571372  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 27043751 - 27043787
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27043751 tttggattgacttatttgagcttatctactgacataa 27043787  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41336909 - 41336873
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41336909 tttggattgacttatttgagtttatctactcacataa 41336873  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 52315118 - 52315150
Alignment:
Q  184 tttggattgacttatttgagtttatctactgac 216  Q
    |||||||||||||||||||||||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgac 52315150  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 52428813 - 52428782
Alignment:
Q  184 tttggattgacttatttgagtttatctactga 215  Q
    ||||||||||||||||||||||||||||||||    
T  52428813 tttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 3891740 - 3891711
Alignment:
Q  184 tttggattgacttatttgagtttatctact 213  Q
    ||||||||||||||||||||||||||||||    
T  3891740 tttggattgacttatttgagtttatctact 3891711  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
Q  187 ggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||||||||| ||||||    
T  9720578 ggattgacttatttgagtttatctactaacataa 9720611  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 19305076 - 19305039
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19305076 atttggattgacttatttgagattatctattgacataa 19305039  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 37636106 - 37636143
Alignment:
Q  183 atttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  37636106 atttggattgatttatttgagtttatctactaacataa 37636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 7367975 - 7368003
Alignment:
Q  184 tttggattgacttatttgagtttatctac 212  Q
    |||||||||||||||||||||||||||||    
T  7367975 tttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15173224 - 15173260
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||  ||||||||||||||||    
T  15173224 tttggattgacttatttgaacttatctactgacataa 15173260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 17822786 - 17822822
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  17822786 tttggattaacttatttgagcttatctactgacataa 17822822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 26590673 - 26590637
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26590673 tttggattgaattatttgagtttatctacttacataa 26590637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32072012 - 32071976
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  32072012 tttggactgacttatttgagtttatctattgacataa 32071976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 41433524 - 41433488
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||| |||||||||||||||||||||| |||||||||    
T  41433524 tttgaattgacttatttgagtttatctcctgacataa 41433488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 42403944 - 42403980
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  42403944 tttggattgacttatttgagcttatcaactgacataa 42403980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 52169941 - 52169977
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||||||||||||||||||||||| | ||||||    
T  52169941 tttggattgacttatttgagtttatctatttacataa 52169977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 54327522 - 54327558
Alignment:
Q  251 ttatatgaaaacaatatgactttgttttatcttttgt 287  Q
    ||||||||||||| | |||||||||||||||||||||    
T  54327522 ttatatgaaaacagtttgactttgttttatcttttgt 54327558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 55437225 - 55437189
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  55437225 tttggattggcttatttgagtttatctactgccataa 55437189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 55870263 - 55870299
Alignment:
Q  184 tttggattgacttatttgagtttatctactgacataa 220  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  55870263 tttggattaacttatttgagtttatctaatgacataa 55870299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 33839 - 33875
Alignment:
Q  189 attgacttatttgagtttatctactgacataatctct 225  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  33839 attgacttatttgaatttatctactgacataagctct 33875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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