View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13679_low_4 (Length: 284)
Name: NF13679_low_4
Description: NF13679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13679_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 30412574 - 30412320
Alignment:
| Q |
18 |
agaagcttggtgcatttgttaatttaggagcttattatcttgttggcattcccatttctgttgtatttgcttttgtcttccacatgaagggacaggtaaa |
117 |
Q |
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| T |
30412574 |
agaagcttggtgcatttgttaatttaggagcttattatcttgttggcattcccatttctgttgtatttgcttttgtcttccacatgaagggacaggtaaa |
30412475 |
T |
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| Q |
118 |
atttaaccaatttttaatcatgttcatttgttgctaagtggttaactatttgatttagagatactatatttgatattatcttgattcttcataattacag |
217 |
Q |
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| T |
30412474 |
agttaaccaatttttaatcatgttcgtttgttgctaagtggttaactatttgatttagagatactatatttgatattatcttgattcttcataattacag |
30412375 |
T |
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| Q |
218 |
gggctatatttaggacttgtgatagcacttgttgtgcaagtggtgtgttatcttc |
272 |
Q |
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| T |
30412374 |
gggctatatttaggacttgtgatagcacttgttgtgcaagtggtgtgttatcttc |
30412320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 30430214 - 30430091
Alignment:
| Q |
18 |
agaagcttggtgcatttgttaatttaggagcttattatcttgttggcattcccatttctgttgtatttgcttttgtcttccacatgaagggacaggtaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
30430214 |
agaagcttggtgcatttgttaatttaggagcttattatcttgttggcattcctatttctgttgtattagcttttgtcttcaacatgaagggacaagtaag |
30430115 |
T |
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| Q |
118 |
atttaaccaatttttaatcatgtt |
141 |
Q |
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| T |
30430114 |
acgtaaccatgttttaatcatgtt |
30430091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 30379854 - 30379595
Alignment:
| Q |
18 |
agaagcttggtgcatttgttaatttaggagcttattatcttgttggcattcccatttctgttgtatttgcttttgtcttccacatgaagggacaggtaaa |
117 |
Q |
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|||| |||||||||||||||||| ||||| | | ||||||||| || ||||| |||||| ||| || |||||| ||||||||||||||||||| |||| |
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| T |
30379854 |
agaaacttggtgcatttgttaatctaggatcattttatcttgtgggaattcctttttctgctgtcttggcttttatcttccacatgaagggacaagtaag |
30379755 |
T |
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| Q |
118 |
atttaaccaatttttaatcatgttcatttgttgctaagtggttaacta----tttgattt--agagatactatatttgatattatcttgattcttcataa |
211 |
Q |
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||||||||| ||||||||| |||| | ||||| | ||| || ||||| || |||| || || || |||| | |||| |||| ||||||| || |
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| T |
30379754 |
atttaaccatcttttaatcaagttcctatgttgttgagtagtaaactaagttcttaatttgaagctctaataaattttagattaacttggttcttcaaaa |
30379655 |
T |
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| Q |
212 |
ttacaggggctatatttaggacttgtgatagcacttgttgtgcaagtggtgtgttatctt |
271 |
Q |
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|| ||||||| | |||||| ||||||| ||||||| |||||||||||||||||| |||| |
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| T |
30379654 |
atataggggctctttttaggtcttgtgacagcacttattgtgcaagtggtgtgttttctt |
30379595 |
T |
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