View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_high_1 (Length: 571)
Name: NF1367_high_1
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 99 - 560
Target Start/End: Complemental strand, 9605188 - 9604728
Alignment:
| Q |
99 |
acttgtgaaaatcaatttcaattgacatcatccaaacatgtcaaagttaattttatgtgtgttgaatcacttctatcacttgctaccatgaaaccaatca |
198 |
Q |
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| T |
9605188 |
acttgtgaaaatcaatttcaattgacatcatccaaacatgtcaaagttaattttatgtgtgttgaatcacttctatcacttgctaccatgaaaccaatca |
9605089 |
T |
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| Q |
199 |
atcacattctaagtatccatggagaagttaaaaattgagatactggagctaatttcaaaatttggaaaagtacgttgtttttattttgaagaaattgtta |
298 |
Q |
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| T |
9605088 |
atcacattctaagtatccattgagaagttaaaaattgagatactggagctaatttcaaa-tttgaaaaagttcgttgtttttattttgaagaaattgtta |
9604990 |
T |
|
| Q |
299 |
taagcatatattgatacaagtttagatttgaacaatttgagatgcagaagctaatttaactcatacaataagttattgtctaactaaacagttcttcttt |
398 |
Q |
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| T |
9604989 |
taagcatatattgatacaagtttagatttgaacaatttgagatgcagaagctaatttaactcatacaataagttattgtctaactaaacagttcttcgtt |
9604890 |
T |
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| Q |
399 |
gttgcaagcttttattgtaatttctttgttcctgaagggtttcatgaaactgtccaaattaactcttaagtcacatttgctttggtgaatttaggtagag |
498 |
Q |
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| T |
9604889 |
gttgcaagcttttattgtaatttctttgttcctgaagggtttcatgaaactgtccaaattaactcttaagtcacatttgctttggtgaatttaggtagag |
9604790 |
T |
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| Q |
499 |
aagttgaaggatttgtgcttgaaccaaagagaagaaatcaagtcattgaagagttcaatttt |
560 |
Q |
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| T |
9604789 |
aagttgaaggatttgtgcttgaaccaaagagaagaaatcaagtcattgaagagttcaatttt |
9604728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 32827501 - 32827449
Alignment:
| Q |
106 |
aaaatcaatttcaattgacatcatccaaacatgtcaaagttaattttatgtgt |
158 |
Q |
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| T |
32827501 |
aaaatcaatttcaattgacatcatccaaacatgtcaaaatcaattatatgtgt |
32827449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 11599620 - 11599554
Alignment:
| Q |
107 |
aaatcaatttcaattgacatcatccaaacatgtcaaagttaattttatgtgtgttgaatcacttcta |
173 |
Q |
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| T |
11599620 |
aaatcaattccaactgaaatcgtcaaaacatgtcaaaatcaattttatgtgtcctgaatcacttcta |
11599554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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