View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_high_4 (Length: 364)
Name: NF1367_high_4
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_high_4 |
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| [»] scaffold0393 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 334
Target Start/End: Original strand, 39960487 - 39960791
Alignment:
| Q |
30 |
tcctcatcagatacttgacttcgacgtacaatcccaacgatgcagcgagccttgcagataattgatgtttacactgacaaacatgcacacaatacacatt |
129 |
Q |
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| T |
39960487 |
tcctcatcagatacttgacttcgacgtacaatcccaacgatgcagcgagccttgtagataattgatgtttacaccgacaaacacgcacaaaatgcacatt |
39960586 |
T |
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| Q |
130 |
gattgtatacttcagcaatagaatgataagaatatctgaagaaataaaaggcaacaagtaagtgtatggccttagttgttcccctgtgtttacaacatca |
229 |
Q |
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| T |
39960587 |
gattgtatacttcagcaatagaatgataagaatatctgaagaaataacaggcaacaagtaagtgtatggccttagttgttcccctgtgtttacaacatca |
39960686 |
T |
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| Q |
230 |
tagaagaaagaataacaggcacaaaagttttcagaaaaacagatatactggtcnnnnnnnctgggattccctagtaacctaaacaaatcaagaatgtgca |
329 |
Q |
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| T |
39960687 |
tagaagaaagaataacaggcacaaaagttttcagaaaaatagatatactggtctttttttctgggattccctagtaacctaaacaaatcaagaatgtgca |
39960786 |
T |
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| Q |
330 |
cataa |
334 |
Q |
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||||| |
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| T |
39960787 |
cataa |
39960791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 12805 - 12738
Alignment:
| Q |
203 |
agttgttcccctgtgtttacaacatcatagaagaaagaataacaggcacaaaagttttcagaaaaaca |
270 |
Q |
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| T |
12805 |
agttgctcccctctgttgacaacatcatagaagaaagaataacaggcacaaaagttttcagcaaaaca |
12738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 13014 - 12879
Alignment:
| Q |
30 |
tcctcatcagatac-ttgacttcgacgtacaatcccaacgatgcagcgagccttgcagataattgatgtttacactgacaa-------acatgcacacaa |
121 |
Q |
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| T |
13014 |
tcctcatcagataccttgacttcgacatatgatcctaatgatgcagcgactcttgcagctaattgatgtttgcactgaaaaaaaaaacacacgcacacaa |
12915 |
T |
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| Q |
122 |
tacacattgattgtatacttcagcaatagaatgata |
157 |
Q |
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| T |
12914 |
tgcacgttgatcatatacttcagcactagaatgata |
12879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 2410428 - 2410361
Alignment:
| Q |
203 |
agttgttcccctgtgtttacaacatcatagaagaaagaataacaggcacaaaagttttcagaaaaaca |
270 |
Q |
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| T |
2410428 |
agttgctcccctctgttgacaacatcatagaagaaagaataacaggcacaaaagttttcagcaaaaca |
2410361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 2410634 - 2410502
Alignment:
| Q |
33 |
tcatcagatac-ttgacttcgacgtacaatcccaacgatgcagcgagccttgcagataattgatgtttacactgacaaa-------catgcacacaatac |
124 |
Q |
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| T |
2410634 |
tcatcagataccttgacttcgacgtatgatcctaatgatgcagcaagtcttgcagctaattgatgtttgcactgaaaaaacacacacacgcacacaatgc |
2410535 |
T |
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| Q |
125 |
acattgattgtatacttcagcaatagaatgata |
157 |
Q |
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| T |
2410534 |
acattgattgtatacttcagcactagaatgata |
2410502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 30598472 - 30598394
Alignment:
| Q |
203 |
agttgttcccctgtgtttacaacatcatagaagaaagaataacaggcacaaaagttttcagaaaaacagatatactggt |
281 |
Q |
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| T |
30598472 |
agttgttcccctttgttgacgaaatcgtaaaagaaagagtaacaggcacaaaagttttcagcaaaacacagatactggt |
30598394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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