View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_high_7 (Length: 335)
Name: NF1367_high_7
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 55 - 306
Target Start/End: Original strand, 11562110 - 11562361
Alignment:
| Q |
55 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggtggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaat |
154 |
Q |
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| T |
11562110 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggtggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaat |
11562209 |
T |
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| Q |
155 |
ttgaactgaataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaactacttgcatattc |
254 |
Q |
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| T |
11562210 |
ttgaactgaataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccaccattgataaaactacttgcatattc |
11562309 |
T |
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| Q |
255 |
ttccagaacaccataataaatagagtaaaagcagaacaaagtaccaacatcc |
306 |
Q |
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| T |
11562310 |
ttccagaacaccataataaatagagtaaaagcagaacaaagtaccaacatcc |
11562361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 163 - 301
Target Start/End: Complemental strand, 11551020 - 11550882
Alignment:
| Q |
163 |
aataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaactacttgcatattcttccagaa |
262 |
Q |
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| T |
11551020 |
aataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgtcgaaccaccattgataaaactatttgcatactcttccagac |
11550921 |
T |
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| Q |
263 |
caccataataaatagagtaaaagcagaacaaagtaccaa |
301 |
Q |
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| T |
11550920 |
caacaaaataaatagagtaaaagcagaacaaagtaccaa |
11550882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 11551371 - 11551258
Alignment:
| Q |
55 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggt-ggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaa |
153 |
Q |
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||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||| || || ||||||||||||||||||| | |||||| |
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| T |
11551371 |
aatttcaaattgaaacgaaacaaacatatagaagagacaaattatggttggttatttgaatgagattctaggaattagagatgatcaaatacaactaaaa |
11551272 |
T |
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| Q |
154 |
tttgaactgaataa |
167 |
Q |
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|||||||| |||| |
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| T |
11551271 |
gttgaactgcataa |
11551258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11561930 - 11561983
Alignment:
| Q |
1 |
atatgaaatctatgagacaaagaagagataaggcatgacaggttctgcacaagt |
54 |
Q |
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| T |
11561930 |
atatgaaatctatgagacaaagaagagataaggcatgacaggttctgcacaagt |
11561983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 11546264 - 11546195
Alignment:
| Q |
173 |
tgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaact |
242 |
Q |
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|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||| |
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| T |
11546264 |
tgaaatacatatagattcataaaattaaaagccaactcaatcattttgtctaaccaccatcaataaaact |
11546195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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