View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1367_high_9 (Length: 261)

Name: NF1367_high_9
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1367_high_9
NF1367_high_9
[»] chr8 (4 HSPs)
chr8 (29-247)||(43894871-43895089)
chr8 (29-223)||(44305300-44305494)
chr8 (33-156)||(44296234-44296357)
chr8 (124-188)||(42822659-42822723)
[»] chr1 (1 HSPs)
chr1 (124-188)||(7991592-7991656)
[»] chr7 (1 HSPs)
chr7 (123-187)||(32736023-32736087)
[»] chr5 (2 HSPs)
chr5 (124-188)||(9634871-9634935)
chr5 (199-232)||(28585840-28585873)
[»] chr2 (2 HSPs)
chr2 (123-186)||(1813545-1813608)
chr2 (173-224)||(18180458-18180509)
[»] chr6 (1 HSPs)
chr6 (124-171)||(10156606-10156653)
[»] chr4 (2 HSPs)
chr4 (119-157)||(23832214-23832252)
chr4 (143-232)||(30617211-30617302)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 43894871 - 43895089
Alignment:
Q  29 aataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatgagtggttaccaagtaagtagttttgtc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43894871 aataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatgagtggttaccaagcaagtagttttgtc 43894970  T
Q  129 aattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatagcctatagcgacgctatttcacaatattttgtactaaaagcg 228  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43894971 aattgcagatcactgaaaataacggtttgtttgaattccgttaagcaacagtgctatagcctatagcgacgctatttcacaatattttgtactaacagcg 43895070  T
Q  229 tatcttgggaaaataacaa 247  Q
    |||||||||||||||||||    
T  43895071 tatcttgggaaaataacaa 43895089  T

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Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 44305300 - 44305494
Alignment:
Q  29 aataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatgagtggttaccaagtaagtagttttgtc 128  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  44305300 aataatgataaaagcccagatcatgcatatatttttagattaaaacaaaaactatccgatattgaaaacaatgagtggtgaccaagcaagtagtcttgtc 44305399  T
Q  129 aattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatagcctatagcgacgctatttcacaatattttgtactaa 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305400 aattgcagatcactgaaaataacggtttgtttgaattccgctaagcaacagtgctatagcctatagcgacgctatttcacaatattttgtactaa 44305494  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 44296234 - 44296357
Alignment:
Q  33 atgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatgagtggttaccaagtaagtagttttgtcaatt 132  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  44296234 atgataaaagcccagattatggatatattttcagataaaaacaaaaacaatccgatattgaaaacaatgagtggttaccacgtgagtagtgttgtcaatt 44296333  T
Q  133 gcagatcactgaaaataacggttt 156  Q
    ||| ||||  || |||||||||||    
T  44296334 gcaaatcaaggagaataacggttt 44296357  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 42822723 - 42822659
Alignment:
Q  124 ttgtcaattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatagc 188  Q
    |||||||||||||||  | ||||||| | |||||||  |||||| ||| ||||||||||||||||    
T  42822723 ttgtcaattgcagatagcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagc 42822659  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 7991656 - 7991592
Alignment:
Q  124 ttgtcaattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatagc 188  Q
    |||||||||||||||||| | ||||| ||||||||| ||||||| |||||||||| |||||||||    
T  7991656 ttgtcaattgcagatcacggtaaatagcggtttgttataattccactaagcaacactgctatagc 7991592  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 32736023 - 32736087
Alignment:
Q  123 tttgtcaattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatag 187  Q
    ||||||||||||||||||| | ||||| |||||||||  |||||||||| |||||| ||||||||    
T  32736023 tttgtcaattgcagatcacgggaaatagcggtttgttcaaattccgctacgcaacactgctatag 32736087  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 9634871 - 9634935
Alignment:
Q  124 ttgtcaattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctatagc 188  Q
    ||||||||||||||| || ||||||| |||||||||  |||||||||| |||||| |||||||||    
T  9634871 ttgtcaattgcagattacagaaaatagcggtttgttcaaattccgctacgcaacattgctatagc 9634935  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 28585873 - 28585840
Alignment:
Q  199 gctatttcacaatattttgtactaaaagcgtatc 232  Q
    |||||||||||||||||||| |||||||||||||    
T  28585873 gctatttcacaatattttgtcctaaaagcgtatc 28585840  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 1813608 - 1813545
Alignment:
Q  123 tttgtcaattgcagatcactgaaaataacggtttgttttaattccgctaagcaacagtgctata 186  Q
    |||||| |||||||||||| |||||||| ||||||||  ||||||||||  |||||||||||||    
T  1813608 tttgtcgattgcagatcacggaaaataatggtttgttcaaattccgctacacaacagtgctata 1813545  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 18180509 - 18180458
Alignment:
Q  173 gcaacagtgctatagcctatagcgacgctatttcacaatattttgtactaaa 224  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| |||||||    
T  18180509 gcaacagtgctatagcctatagcgccgctgtttgacaatattttatactaaa 18180458  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 10156606 - 10156653
Alignment:
Q  124 ttgtcaattgcagatcactgaaaataacggtttgttttaattccgcta 171  Q
    |||||||||||||||||| ||||||| |||||||||| |||| |||||    
T  10156606 ttgtcaattgcagatcaccgaaaatagcggtttgtttgaatttcgcta 10156653  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 23832252 - 23832214
Alignment:
Q  119 tagttttgtcaattgcagatcactgaaaataacggtttg 157  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  23832252 tagtgttgtcaattgcagatcacggaaaataacggtttg 23832214  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 30617211 - 30617302
Alignment:
Q  143 gaaaataacggtttgttttaattccgctaagcaacagtgctatagc----ctatagcgacgctatttcacaatattttgtactaaaagcgtatc 232  Q
    ||||||| |||||||||  |||||| ||| |||||| |||||||||    |||| || ||  ||||||||||||||||||||||| ||||||||    
T  30617211 gaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccac--tatttcacaatattttgtactaatagcgtatc 30617302  T

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