View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_low_10 (Length: 336)
Name: NF1367_low_10
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 11561954 - 11561625
Alignment:
| Q |
1 |
cttctttgtctcatagatttcatatttaaaagttcaaattatgtagctcttcacagttccacatcaattgtccaagagaaattttgtgtgaatgtcaatt |
100 |
Q |
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| T |
11561954 |
cttctttgtctcatagatttcatatttgaaagttcaaattatgtagctcttcacagttccacatcaattgtccaagagaaattttgtgtgaatgtcaatt |
11561855 |
T |
|
| Q |
101 |
tgttttgtggtttccattctctgcaacaataatatttattaacctgccttcgatttatgtctctgttatatcataaaacattcagacttgttctttacgt |
200 |
Q |
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| T |
11561854 |
tgttttgtggttttcattctctgctacaataatatttattaacctgccttcgatttatgtctctgttatatcataaaacattcagacttgctctttacgt |
11561755 |
T |
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| Q |
201 |
atacagtttatcgatatattcccactgaaagttacagtataccatactaggtagtgactatggaatggaatgatcgtttggcatttttaatgacaaatag |
300 |
Q |
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| T |
11561754 |
atacaggttatcgatatattcccactgaaagttacagtataccatactaggtagtgactatggaatggaatgatcgtttggcatttttaatgacaaatag |
11561655 |
T |
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| Q |
301 |
ttcgatattaacacacgtgacctatgctac |
330 |
Q |
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| T |
11561654 |
ttcgatattaacacacgtgacctatgctac |
11561625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 11551550 - 11551696
Alignment:
| Q |
1 |
cttctttgtctcatagatttcatatttaaaagttcaaattatgtagctcttcacagttccacatcaattgtc-------caagagaaattttgtgtgaat |
93 |
Q |
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| T |
11551550 |
cttctttgtctcataactttca-atttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtgaat |
11551648 |
T |
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| Q |
94 |
gtcaatttgttttgtggtttccattctctgcaacaataatatttatta |
141 |
Q |
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| T |
11551649 |
gtcgatttcctttgtggtttccgttctctgctacaacaacatttatta |
11551696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11546693 - 11546819
Alignment:
| Q |
1 |
cttctttgtctcatagatttcatatttaaaagttcaaattatgtagctcttcacagttccacatcaatt---gtc-caagagaaattttgtgtgaatgtc |
96 |
Q |
| |
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||||||||||||||| |||||| |||| || || |||| ||||||||||||||||||||| || ||| | | ||||||| ||||||||||||||| |
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| T |
11546693 |
cttctttgtctcataaatttca-atttgaatgtccaaagtatgtagctcttcacagttccccaacaacctgagccacaagagatgttttgtgtgaatgtc |
11546791 |
T |
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| Q |
97 |
aatttgttttgtggtttccattctctgc |
124 |
Q |
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| T |
11546792 |
aatttgttttgtggtttccgttctctgc |
11546819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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