View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1367_low_12 (Length: 320)

Name: NF1367_low_12
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1367_low_12
NF1367_low_12
[»] chr6 (10 HSPs)
chr6 (30-278)||(20770444-20770692)
chr6 (33-216)||(6947911-6948094)
chr6 (33-219)||(6921381-6921567)
chr6 (33-72)||(6954550-6954589)
chr6 (146-220)||(6954663-6954737)
chr6 (146-219)||(6943098-6943171)
chr6 (33-73)||(6942998-6943038)
chr6 (29-70)||(19746721-19746762)
chr6 (33-61)||(17369675-17369703)
chr6 (38-70)||(34861907-34861939)
[»] chr4 (8 HSPs)
chr4 (29-147)||(53774765-53774883)
chr4 (29-110)||(11971009-11971090)
chr4 (30-110)||(11981711-11981791)
chr4 (38-74)||(10468040-10468076)
chr4 (38-74)||(10482179-10482215)
chr4 (29-72)||(3557726-3557769)
chr4 (29-72)||(3565744-3565787)
chr4 (40-72)||(10475207-10475239)
[»] chr5 (3 HSPs)
chr5 (33-273)||(18964861-18965104)
chr5 (29-70)||(23086784-23086825)
chr5 (35-72)||(29597585-29597622)
[»] chr7 (18 HSPs)
chr7 (149-298)||(14076469-14076618)
chr7 (149-298)||(14386497-14386646)
chr7 (29-73)||(13416938-13416982)
chr7 (29-72)||(9807824-9807867)
chr7 (33-72)||(14076678-14076717)
chr7 (33-72)||(14386706-14386745)
chr7 (29-72)||(22063642-22063685)
chr7 (29-71)||(660874-660916)
chr7 (30-72)||(19637245-19637287)
chr7 (33-72)||(20352095-20352134)
chr7 (29-72)||(22070111-22070154)
chr7 (29-72)||(22080868-22080911)
chr7 (29-72)||(22100493-22100536)
chr7 (33-119)||(19604494-19604580)
chr7 (30-72)||(29899374-29899416)
chr7 (29-70)||(6864834-6864875)
chr7 (35-72)||(19344608-19344645)
chr7 (35-63)||(20140851-20140879)
[»] chr2 (3 HSPs)
chr2 (33-72)||(20975558-20975597)
chr2 (33-72)||(25698507-25698546)
chr2 (159-219)||(20712690-20712750)
[»] scaffold0867 (1 HSPs)
scaffold0867 (29-72)||(4696-4739)
[»] scaffold0354 (1 HSPs)
scaffold0354 (29-64)||(7471-7506)
[»] chr1 (3 HSPs)
chr1 (33-72)||(4570927-4570966)
chr1 (29-72)||(39379088-39379131)
chr1 (29-72)||(50645512-50645555)
[»] chr8 (1 HSPs)
chr8 (33-70)||(29390288-29390325)
[»] chr3 (1 HSPs)
chr3 (29-66)||(3625740-3625777)
[»] scaffold0097 (1 HSPs)
scaffold0097 (159-219)||(16529-16589)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 20770692 - 20770444
Alignment:
Q  30 gactcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacacacgaagagttt 129  Q
    |||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||    
T  20770692 gactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaaatacaatccatcaacacacaaagagttt 20770593  T
Q  130 gattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatttcttgattat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20770592 gattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaattgcttgattat 20770493  T
Q  230 aagattattctgaggacaattataacgatgacagaccaaccaacaaata 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20770492 aagattattctgaggacaattataacgatgacagaccaaccaacaaata 20770444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 6947911 - 6948094
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacacacgaagagtttgat 132  Q
    ||||||||||||||||||||||||||||| | |||||| |           | |||||| ||||||||||  |||||||||||||||  ||||||| ||     
T  6947911 tcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaa 6948010  T
Q  133 tatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaa 216  Q
     |||| || |   ||||||||||||| ||||||| |||||| || | ||| ||||| || |||||||||| ||||| |||||||    
T  6948011 catcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaa 6948094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 6921381 - 6921567
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacacacgaagagtttgat 132  Q
    ||||||||||||||||||||||||||||| ||||||||||          |  ||||| ||||||| | |  ||||||||||| |||  ||||||| ||     
T  6921381 tcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaa 6921480  T
Q  133 tatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatt 219  Q
     || | || |   ||||||||||||| ||||||| ||||| ||| | ||||||||| || |||||||||| ||||| ||||||||||    
T  6921481 cattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaatt 6921567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 6954550 - 6954589
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6954550 tcttcaactccaaattccttcatttgccaaataacaaaat 6954589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 6954663 - 6954737
Alignment:
Q  146 ttcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaattt 220  Q
    ||||||||||||| | ||||| ||||||||| | ||||||||| ||  || |||||| |||||||||||||||||    
T  6954663 ttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaattt 6954737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 6943098 - 6943171
Alignment:
Q  146 ttcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatt 219  Q
    ||||||||||||||||||||| ||||| | | | ||||||||| || |||||||||| ||||| ||||| ||||    
T  6943098 ttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaatt 6943171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 6942998 - 6943038
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaata 73  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  6942998 tcttcaactccaaattccttcatttgctaaataacaaaata 6943038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 19746721 - 19746762
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaa 70  Q
    |||||||| ||||||||| | |||||||||||||||||||||    
T  19746721 agactcttgaactccaaacttcttcatttgccatataacaaa 19746762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 17369703 - 17369675
Alignment:
Q  33 tcttcaactccaaattccttcatttgcca 61  Q
    |||||||||||||||||||||||||||||    
T  17369703 tcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 34861907 - 34861939
Alignment:
Q  38 aactccaaattccttcatttgccatataacaaa 70  Q
    ||||||||| |||||||||||||||||||||||    
T  34861907 aactccaaactccttcatttgccatataacaaa 34861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 53774883 - 53774765
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacacacgaagagtt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| |        || ||||| ||||||||||||||||||||||||| ||| || | ||    
T  53774883 agactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaaatacaatccatcaacgcacaaatattt 53774784  T
Q  129 tgattatcaagtggaaatt 147  Q
     ||||||||| ||| ||||    
T  53774783 ggattatcaaatggcaatt 53774765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 11971009 - 11971090
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |        || ||||||||||||||||| |||||||    
T  11971009 agactcttccactccaaattccttcatttgccatataacaaaatgagtttgttcaaaatcatgagaaaaacaaagacaatcc 11971090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 11981711 - 11981791
Alignment:
Q  30 gactcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatcc 110  Q
    |||||||| |||||||||||||||||||||||||||||||||| |        || ||||||||||||||||| |||||||    
T  11981711 gactcttccactccaaattccttcatttgccatataacaaaatgagtttgttgaaaatcatgagaaaaacaaagacaatcc 11981791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 10468076 - 10468040
Alignment:
Q  38 aactccaaattccttcatttgccatataacaaaataa 74  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10468076 aactccaaaatccttcatttgccatataacaaaataa 10468040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 10482215 - 10482179
Alignment:
Q  38 aactccaaattccttcatttgccatataacaaaataa 74  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10482215 aactccaaaatccttcatttgccatataacaaaataa 10482179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 3557769 - 3557726
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  3557769 agactcttcaaccccaaattccttcatatgccatataataaaat 3557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 3565787 - 3565744
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  3565787 agactcttcaaccccaaattccttcatctgccatataataaaat 3565744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10475239 - 10475207
Alignment:
Q  40 ctccaaattccttcatttgccatataacaaaat 72  Q
    ||||||| |||||||||||||||||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaat 10475207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 18964861 - 18965104
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacacacgaagagtttgat 132  Q
    ||||||||||||||||||||||||||||||||||  |||| |        || |||||||| ||||||||  |||| |||||| |||| ||| ||  ||     
T  18964861 tcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgagtaaaacaaaggcaattcatcaatacacaaagggtcggag 18964960  T
Q  133 tatcaa---gtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatttcttgattat 229  Q
    ||||||   || | || |||||||||||| ||||||||||||||||| |  |||||||  || ||| |||||| ||||| |||||||||| ||  ||       
T  18964961 tatcaagcggttgcaactcatcacaacatggagggagtaacaactgtgtaaatgtctccatccccagatcaagtgagataatcacaaattgctcaatcga 18965060  T
Q  230 aagattattctgaggacaattataacgatgacagaccaaccaac 273  Q
    |||| | || ||| ||||||||||||| |||| |||||||||||    
T  18965061 aagaatcttttgatgacaattataacggtgacggaccaaccaac 18965104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 23086825 - 23086784
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaa 70  Q
    |||||||| ||||||||| |||||||| ||||||||||||||    
T  23086825 agactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 29597585 - 29597622
Alignment:
Q  35 ttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||||||  |||||||||||||||||||||    
T  29597585 ttcaactccaaattcaatcatttgccatataacaaaat 29597622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 14076618 - 14076469
Alignment:
Q  149 atcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatttcttgattataagattattctgaggacaa 248  Q
    |||||||||| ||||||||||||| ||| | ||||||||  || |||||||||| ||||| |||||||||| ||  ||  | |||||||||  | ||||     
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgacat 14076519  T
Q  249 ttataacgatgacagaccaaccaacaaatactattacttaaatatacacc 298  Q
     ||||||| |||| |||||||||||  | ||||||||| ||||| |||||    
T  14076518 gtataacggtgacggaccaaccaacttaaactattactcaaatacacacc 14076469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 14386646 - 14386497
Alignment:
Q  149 atcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatttcttgattataagattattctgaggacaa 248  Q
    |||||||||| ||||||||||||| ||| | ||||||||  || |||||||||| ||||| |||||||||| ||  ||  | |||||||||  | ||||     
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgacat 14386547  T
Q  249 ttataacgatgacagaccaaccaacaaatactattacttaaatatacacc 298  Q
     ||||||| |||| |||||||||||  | ||||||||| ||||| |||||    
T  14386546 gtataacggtgacggaccaaccaacttaaactattactcaaatacacacc 14386497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 13416938 - 13416982
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaata 73  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  13416938 agactcttcaactccaaattccttcatttgccatatgataaaata 13416982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 9807867 - 9807824
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  9807867 agactcttcaactccaaattccttcatctgccatataacgaaat 9807824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 14076717 - 14076678
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  14076717 tcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 14386745 - 14386706
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  14386745 tcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22063685 - 22063642
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  22063685 agactcttgaaatccaaattccttcatttgccatataacaaaat 22063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 660874 - 660916
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaa 71  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  660874 agactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 19637245 - 19637287
Alignment:
Q  30 gactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  19637245 gactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 20352134 - 20352095
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  20352134 tcttcaactccaaattccttcatttcccatattacaaaat 20352095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22070154 - 22070111
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  22070154 agactcttgaactccaaattgcttcatttgccatataataaaat 22070111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22080911 - 22080868
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  22080911 agactcttgaactccaaattgcttcatttgccatataataaaat 22080868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22100536 - 22100493
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  22100536 agactcttgaactccaaatttcttcatttgccatataataaaat 22100493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 19604494 - 19604580
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaataannnnnnnnaacatcatgagaaaaacaaatacaatccatcaacaca 119  Q
    ||||||||||||||||||||||| |||||||||| ||| | |        || ||||||||||||||||||  | ||||||||||||    
T  19604494 tcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaacaaatggagtccatcaacaca 19604580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 29899416 - 29899374
Alignment:
Q  30 gactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||    
T  29899416 gactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 6864834 - 6864875
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaa 70  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  6864834 agactcttcaactccaaattccttcattaaccatattacaaa 6864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 19344608 - 19344645
Alignment:
Q  35 ttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  19344608 ttcaactccaaattccatcatctgccatataacaaaat 19344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 20140851 - 20140879
Alignment:
Q  35 ttcaactccaaattccttcatttgccata 63  Q
    |||||||||||||||||||||||||||||    
T  20140851 ttcaactccaaattccttcatttgccata 20140879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 20975597 - 20975558
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20975597 tcttcaactccaaattccctcatttgccatataacaaaat 20975558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 25698546 - 25698507
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  25698546 tcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 20712690 - 20712750
Alignment:
Q  159 tgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatt 219  Q
    |||||||| ||||  ||| ||||||||||  || ||||||| |||||||||||||||||||    
T  20712690 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaatt 20712750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 4696 - 4739
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  4696 agactcttgaactccaaatttcttcatttgccatataataaaat 4739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 7506 - 7471
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatat 64  Q
    |||||| |||||||||||||||||||||||||||||    
T  7506 agactcatcaactccaaattccttcatttgccatat 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 4570966 - 4570927
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  4570966 tcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 39379088 - 39379131
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  39379088 agactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 50645512 - 50645555
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataacaaaat 72  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||    
T  50645512 agactcttgaactccaaaatccttcatttgccacataacaaaat 50645555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 29390325 - 29390288
Alignment:
Q  33 tcttcaactccaaattccttcatttgccatataacaaa 70  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  29390325 tcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 3625777 - 3625740
Alignment:
Q  29 agactcttcaactccaaattccttcatttgccatataa 66  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  3625777 agactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 16529 - 16589
Alignment:
Q  159 tgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatt 219  Q
    |||||||| ||||  ||| ||||||||||  || ||||||| |||||||||||||||||||    
T  16529 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaatt 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University