View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1367_low_15 (Length: 256)

Name: NF1367_low_15
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1367_low_15
NF1367_low_15
[»] chr8 (2 HSPs)
chr8 (10-240)||(44305518-44305751)
chr8 (10-240)||(43895097-43895327)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 44305751 - 44305518
Alignment:
Q  10 aagaatatctgtgtgattcaaagtttgacggttagtgtaaatgccaggttat---gtccccatactaaagaagcaaaatgggattaagataatttagagg 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  44305751 aagaatatctatgtgattcaaagtttgacggttagtgtaaatgccaggttattatgtccccatactaaagaagcaaaatgggattaagataatttagagg 44305652  T
Q  107 caaatgaagatttgttcattttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtctcagcttgcttgcaatgtttttaaata 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  44305651 caaatgaagatttgttctttttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtcgcagcttacttgcaatgtttttaaata 44305552  T
Q  207 gcagcgctatagctccattttagaacggaatttg 240  Q
    |||||| |||||||||||||||||||||||||||    
T  44305551 gcagcgatatagctccattttagaacggaatttg 44305518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 43895327 - 43895097
Alignment:
Q  10 aagaatatctgtgtgattcaaagtttgacggttagtgtaaatgccaggttat---gtccccatactaaagaagcaaaatgggattaagataatttagagg 106  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||    
T  43895327 aagaatatctatgcgattcaaagtttgacggtcagtgtaaatgccaggttattatgtccccatactaaag---caaaatgggattaagataatttagagg 43895231  T
Q  107 caaatgaagatttgttcattttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtctcagcttgcttgcaatgtttttaaata 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43895230 caaatgaagatttgttctttttatttttgttatttgttgttaatactaattctgatgattgcttttatctgtctcagcttgcttgcaatgtttttaaata 43895131  T
Q  207 gcagcgctatagctccattttagaacggaatttg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  43895130 gcagcgctatagctccattttagaacggaatttg 43895097  T

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