View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_low_19 (Length: 238)
Name: NF1367_low_19
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 35566492 - 35566692
Alignment:
| Q |
1 |
ccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566492 |
ccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtac |
35566591 |
T |
|
| Q |
101 |
tttattgatatgaacaatcgcagcacataccgtttcgttaaagtcattcttcaatcatctgagaagtgggtttaaaatcaagcacataaatgataaatca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35566592 |
tttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatca |
35566691 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
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|
| T |
35566692 |
g |
35566692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32203500 - 32203300
Alignment:
| Q |
1 |
ccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203500 |
ccggccacactcgagagactgcttgatgtcatgttcagcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtac |
32203401 |
T |
|
| Q |
101 |
tttattgatatgaacaatcgcagcacataccgtttcgttaaagtcattcttcaatcatctgagaagtgggtttaaaatcaagcacataaatgataaatca |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32203400 |
tttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatca |
32203301 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
32203300 |
g |
32203300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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