View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1367_low_3 (Length: 554)

Name: NF1367_low_3
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1367_low_3
NF1367_low_3
[»] chr4 (5 HSPs)
chr4 (227-459)||(8498336-8498568)
chr4 (337-392)||(27447495-27447550)
chr4 (337-392)||(27459834-27459889)
chr4 (343-407)||(48708983-48709047)
chr4 (282-413)||(9215940-9216071)
[»] chr5 (2 HSPs)
chr5 (343-444)||(23683530-23683631)
chr5 (343-444)||(23851180-23851281)
[»] chr8 (2 HSPs)
chr8 (343-444)||(14776587-14776688)
chr8 (343-444)||(11304668-11304769)
[»] chr3 (1 HSPs)
chr3 (343-444)||(11965974-11966075)
[»] chr2 (1 HSPs)
chr2 (324-392)||(41215800-41215868)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 227 - 459
Target Start/End: Original strand, 8498336 - 8498568
Alignment:
Q  227 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttccgattttcaagggtaagcaaaagagatcaca 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8498336 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttctgattttcaagggtaagcaaaagagatcaca 8498435  T
Q  327 tctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcatt 426  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8498436 tcttcaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcaggaagagtcaccttagtgaaagcaatcatt 8498535  T
Q  427 ctaggtatgatggtgcactctatatcaatttat 459  Q
    | |||||||||||||||||||||||||||||||    
T  8498536 caaggtatgatggtgcactctatatcaatttat 8498568  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 27447495 - 27447550
Alignment:
Q  337 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 392  Q
    |||| ||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  27447495 attgcagataagataaagtctaagcttagtgcgtggaaagcttctcttctctctat 27447550  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 27459834 - 27459889
Alignment:
Q  337 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 392  Q
    |||| ||||||||| || |||||||||||||| |||||||||| ||||||||||||    
T  27459834 attgcagataagataaagtctaagcttagtgcgtggaaagcttttcttctctctat 27459889  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 48708983 - 48709047
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcac 407  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| ||| | ||||||||    
T  48708983 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgcagggagagtcac 48709047  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 9215940 - 9216071
Alignment:
Q  282 ttaccttggtgttccgattttcaagggtaagcaaaagagatcacatctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttct 381  Q
    ||||||||| || || ||||||||||| |||| |||||  || ||| |  |||| ||||  || ||||| |||||| |||||||||| |||||||| |||    
T  9215940 ttaccttggagtcccaattttcaaggggaagccaaagaagtctcatttacaacctattgctgacaagataaaatctgagcttagtgcgtggaaagcatct 9216039  T
Q  382 cttctctctatagcatgaagagtcaccttagt 413  Q
    ||| | || || ||| |||||||||| |||||    
T  9216040 cttttatccattgcaggaagagtcactttagt 9216071  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 23683530 - 23683631
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatggtgc 442  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| | ||||||||  | ||||||||  | |||| |||||||||| |||    
T  23683530 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcactcttgtgaaagctgtgattcaaggtatgatgatgc 23683629  T
Q  443 ac 444  Q
    ||    
T  23683630 ac 23683631  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 23851281 - 23851180
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatggtgc 442  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| | ||||||||  | ||||||||  | |||| |||||||||| |||    
T  23851281 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcactcttgtgaaagctgtgattcaaggtatgatgatgc 23851182  T
Q  443 ac 444  Q
    ||    
T  23851181 ac 23851180  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 14776688 - 14776587
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatggtgc 442  Q
    ||||||||||| ||||||||| | |||||||||||||||||||| ||||| ||| | ||||||||  | ||||||||  | |||| | |||||||| |||    
T  14776688 gataagattaagtctaagcttggggcttggaaagcttctcttctatctattgcagggagagtcactcttgtgaaagctgtgattcaaagtatgatgatgc 14776589  T
Q  443 ac 444  Q
    ||    
T  14776588 ac 14776587  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 11304668 - 11304769
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatggtgc 442  Q
    ||||||||||| ||||||| | ||||||||||||| |||||| | ||||| ||| | ||||||||  | |||||||   | |||| |||||||||| |||    
T  11304668 gataagattaagtctaagcatggtgcttggaaagcctctcttttatctattgcagggagagtcactcttgtgaaagttgtgattcaaggtatgatgatgc 11304767  T
Q  443 ac 444  Q
    ||    
T  11304768 ac 11304769  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 11965974 - 11966075
Alignment:
Q  343 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatggtgc 442  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| | | | ||||||||  | ||||||||  | |||| |||||||||| |||    
T  11965974 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgtagggagagtcactcttgtgaaagctgtgattcaaggtatgatgatgc 11966073  T
Q  443 ac 444  Q
    ||    
T  11966074 ac 11966075  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 41215868 - 41215800
Alignment:
Q  324 acatctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 392  Q
    ||||||||||||||||| ||||| | | ||||| ||| | ||||| ||||||||||||||||| |||||    
T  41215868 acatctttaaccgattgcagatagggtaaaatccaagttgagtgcctggaaagcttctcttctatctat 41215800  T

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