View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367_low_5 (Length: 523)
Name: NF1367_low_5
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 28 - 511
Target Start/End: Complemental strand, 35894968 - 35894485
Alignment:
| Q |
28 |
cacattttaacattaaaatcaacattattaattacttcttcagatattagagaaacacttaatttgagacaaagaattaaaactgatcaaccactattct |
127 |
Q |
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| T |
35894968 |
cacattttaacattaaaatcaacattattaattacttcttcagatattagagaaacacttaatttgagacagataattaaaactgatcaaccactattgt |
35894869 |
T |
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| Q |
128 |
acctgattcaactagaatgttataccaccatgattaaaccaatagacaaactaataggttaccgttacaacatgttaatgttaaacataccccagtttcc |
227 |
Q |
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| T |
35894868 |
acctgattcaactagaatgttataccaccatgattaaaccaatagacaaactagtaggttaccgtaacaacatgttaatgttaaacataccccagtttcc |
35894769 |
T |
|
| Q |
228 |
aattcaaccagttgaactgactggttagttcgactcgttcggtccgattgtaaaaatattgatccaaacacaataaaagggaaataagaaaaatttccta |
327 |
Q |
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| T |
35894768 |
aattcaaccagttgaactgactggttcgttcgactcgttcggtccgattgtaaaaatattgatccaaacacaataaaagggaaataagaaaaatttccta |
35894669 |
T |
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| Q |
328 |
agtagagatttgcatagagtacatcaaataatttcattttcatcaatcaatcaattgtagtagttaaaagaattgaagttaggaaatggcttacatcatt |
427 |
Q |
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| T |
35894668 |
agtagagatttgcatagagtacatcaaataatttcattttcatcaatcaatcaattgtagtagttaaaagaattgaagttaggaaatggcttacatcatt |
35894569 |
T |
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| Q |
428 |
tccacccattgaaggaacaagaaatgaaggaatcataactgcagttcctaatgccaaaatataatgttgaaaaccaagtagtat |
511 |
Q |
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| T |
35894568 |
tccacccattgaaggaacaagaaatgaaggaatcataactgcagttcctaatgccaaaatataatgttgaaaaccaagtagtat |
35894485 |
T |
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Back To:
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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 417 - 502
Target Start/End: Complemental strand, 5041631 - 5041546
Alignment:
| Q |
417 |
cttacatcatttccacccattgaaggaacaagaaatgaaggaatcataactgcagttcctaatgccaaaatataatgttgaaaacc |
502 |
Q |
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||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| |
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| T |
5041631 |
cttacatcagttccacccatcaaaggcacaagaaatgaaggaatcatcactgcagttcctaaagccaaaatgtaatgctgaaaacc |
5041546 |
T |
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