View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1367_low_8 (Length: 362)
Name: NF1367_low_8
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 43856592 - 43856333
Alignment:
| Q |
6 |
ctccaacaatataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43856592 |
ctccaactatataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaa |
43856493 |
T |
|
| Q |
106 |
ttttgagttctactttcagtaaaaagacaaaaatatcacataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgcgtt |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43856492 |
ttttgagttctactttcagtataaagacaaaaatatcacataatccgcacaatgcacatgacagtcgaactaaaatacattatttacattttgtcgcgtt |
43856393 |
T |
|
| Q |
206 |
catttatcgagcaataacaacttttaactatgaatcacggtatcacattaggcataaatc |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
43856392 |
catttatcgagcaataacaacgtttaactatgaatcccggtatcgcattaggcataaatc |
43856333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 14243947 - 14244142
Alignment:
| Q |
6 |
ctccaacaatataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaa |
105 |
Q |
| |
|
||||||| ||||||| |||||||||| ||| || ||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||||| ||| |
|
|
| T |
14243947 |
ctccaactatataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatctattgatgctaaaa--agtcatttgttttt-caa |
14244041 |
T |
|
| Q |
106 |
ttttgagttctactttcagtaaaaagacaaaaatatcacata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcg |
201 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
14244042 |
ttttgagttctaatttcagtctaaagacaaaaatatcacatacataattcgcacaacgcacatgacagtcgaactaaaatagaatatttacattttgtcg |
14244141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 1875069 - 1874895
Alignment:
| Q |
6 |
ctccaacaatataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||| | | || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
1875069 |
ctccaactatataaagaataaaatgacaaattt--gtttgtacatttcctttggttccacaccgtctattgatgctaaaataagtcatttgttttt-caa |
1874973 |
T |
|
| Q |
106 |
ttttgagttctactttcagtaaaaagacaaaaatatcac----ataatccgcacaatgcacatgacagttgaactaaa |
179 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1874972 |
ttttgagttctactatcagtataaagacaaaaatatcacataaataatccgcacaatgcacatgagagtcgaactaaa |
1874895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 6354497 - 6354692
Alignment:
| Q |
6 |
ctccaacaatataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaa |
105 |
Q |
| |
|
||||||| ||||||| |||||||||| ||| || ||||||||||||||||||||||||| | || ||| ||||||||| | ||||||||||| |||| |
|
|
| T |
6354497 |
ctccaactatataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatcaattgatgctaaaa--agtcatttgtttt-tcaa |
6354591 |
T |
|
| Q |
106 |
ttttgagttctactttcagtaaaaagacaaaaatatc----acataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcg |
201 |
Q |
| |
|
||| |||||||| |||||||| ||||||||||||||| ||||||| ||||||| | |||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
6354592 |
tttagagttctaatttcagtataaagacaaaaatatcacatacataattcgcacaacgaacatgacagtcgaactaaaatagaatatttacattttgtcg |
6354691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University