View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368-INSERTION-2 (Length: 419)
Name: NF1368-INSERTION-2
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368-INSERTION-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 49755784 - 49755364
Alignment:
| Q |
8 |
attatcacctctttcaatcaaacgatcaacaagatgacttccaacgaaaccagctccaccggtaaccagtactctcttctgtctcttgcttttcaatcca |
107 |
Q |
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| T |
49755784 |
attatcacctctttcaatcaaacgatccacaagatgacttccaacgaaaccagctccaccggtaaccagtactctcttctgtctcttgcttttcaatcca |
49755685 |
T |
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| Q |
108 |
acggccaatggaactcttcgttttctttcatctctaccgtgttcctctaacagaactcgcctagtcggaagagttaactcggttccaacgaacgacgaag |
207 |
Q |
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| T |
49755684 |
acggccaatggaactcttcgttttctttcatctctaccgtgttcctctaaaagaactcgcctagtcggaagagttaactccgttccaacgaacgaagaag |
49755585 |
T |
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| Q |
208 |
agtcatgatgttgtggaagagtggaccgagaagggagatagtggaagaagaaagtggaaattgctattccaatgagaaggaaagggactcgatttagaag |
307 |
Q |
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| T |
49755584 |
agtcatgatgttgtggaagagtggatcgagaagggagatagtggaagaagaaagtggaaattgctattccaatgagaaggaaagggactcgatttagaag |
49755485 |
T |
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| Q |
308 |
ca---------tgtttgttctcgttcttggaagaggattatcacgatgggatgatgaatctgtggtttgatctcttgtttggtttctgtgaattagttca |
398 |
Q |
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| T |
49755484 |
catgttgatgatgtttgttctcgttcttggaagaggattatcacgatgggatgatgaatctgtggtttgatctcttgtttggtttctgtgaattagttca |
49755385 |
T |
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| Q |
399 |
gagctcattttgtttttgtat |
419 |
Q |
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| T |
49755384 |
gaactcattttgtttttgtat |
49755364 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 29126989 - 29126946
Alignment:
| Q |
32 |
atcaacaagatgacttccaacgaaaccagctccaccggtaacca |
75 |
Q |
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| T |
29126989 |
atcaaccagatgacttccaacaaaaccagcaccaccggtaacca |
29126946 |
T |
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