View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13680_high_1 (Length: 712)
Name: NF13680_high_1
Description: NF13680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13680_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 694
Target Start/End: Original strand, 40832946 - 40833622
Alignment:
| Q |
11 |
cacagacagtaccaaggtgaatagggcaaagattttgattttttccttcttaggtgcaaatatgatgaatatcaaaacatatatgatttcaatccctgct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40832946 |
cacagacagtaccaaggtgaatagggcaaagattttgattttttccttcttaggtgcaaatatgatgaatatcaaaacatatatgatttcaatccctgct |
40833045 |
T |
|
| Q |
111 |
ccggtgccatttactgttgttaccggtatgttgttgggagacacaaaaggcagaccgtacctgtagatgttggaaatcagaagctactcnnnnnnn--ta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40833046 |
ccggtgccatttactgttgttaccggtatgttgttgggagacacaaaaggcagaccgtacctgtagatgttggaaatcagaagctactaaaaaaaaaata |
40833145 |
T |
|
| Q |
209 |
catgcgcacgcgtacagacacacac--ctcttcttcgactagtgaaggaaatcttccaaaatattccttttaaaacggaatacactaattaaaagcnnnn |
306 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40833146 |
catgcgcacgcgtacacacacacacacctcttcttcgactagtgaaggaaaccttccgaaatattccttttaaaatggaatacactaattaaaagcaaaa |
40833245 |
T |
|
| Q |
307 |
nnnnntaccaagtaaggtttaggatataaattactctg--aagatttaccaattgaaagcaaaaattcaattgctatttgatttttatcattatgatccc |
404 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40833246 |
aaaa-taccaagtaaggtttaggatataaattgctctgtgaagatttaccaattgaaagcaaaaattcaattgctatttgatttttatcattatgatccc |
40833344 |
T |
|
| Q |
405 |
atagttttgttcctattaaagacaatcatgttcataaagtcatcatgctctaaatgtgacatacacttccagatccaacctaaattcactacattgcatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40833345 |
atagttttgttcctattaaagacaatcatgttcataaagtcatcatgctctaaatgtgacatacacttccagatccaacctaaattcactacattgcatg |
40833444 |
T |
|
| Q |
505 |
cctctaaggtttaaccataaaagatgctatgcatataagaaaacttttcacaattaatgtataaaaagggaaattaattacagcatggtggaagcaaaaa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40833445 |
cctctaaggtttaaccataaaagatgctatgcatgtaagaaaacttttcacaattaatgtataaaaagggaaattaattacagcatggtggaagcaaaaa |
40833544 |
T |
|
| Q |
605 |
gagagacagttggaccaaatagcaacaatttaccatacaaaattggaaggaagcaagtcacgtgacttgacacaagacttacggggaagt |
694 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
40833545 |
gagagacagttggaccaaatagca------------acaaaattggaaggaagcaagtcacgtgacttgacacaagacttagggtgaagt |
40833622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 10054963 - 10054860
Alignment:
| Q |
54 |
tccttcttaggtgcaaatatgatgaatatcaaaacatatatgatttcaatccctgctccggtgccatttactgttgttaccggtatgttgttgggagaca |
153 |
Q |
| |
|
||||||||||||||||| | ||||| || |||||||||||||||||||| ||||||| || ||||||| ||||||| ||||||||| || |||| |
|
|
| T |
10054963 |
tccttcttaggtgcaaacactatgaaaatgaaaacatatatgatttcaataactgctcctgttccatttatgattgttacaagtatgttgtctggtgaca |
10054864 |
T |
|
| Q |
154 |
caaa |
157 |
Q |
| |
|
|||| |
|
|
| T |
10054863 |
caaa |
10054860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University