View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13680_high_1_N (Length: 498)
Name: NF13680_high_1_N
Description: NF13680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13680_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2101579 - 2101806
Alignment:
| Q |
1 |
cttttaaaaaagttttgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatatgatttt-ttataacctttatcatttttca |
99 |
Q |
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| T |
2101579 |
cttttaaaaaagttttgttttgtaattttcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttca |
2101678 |
T |
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| Q |
100 |
ttctcaattttaaccttgtagctttagttgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-ta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
2101679 |
ttctcaattttaaccttgtagctttagttgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtctta |
2101777 |
T |
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| Q |
199 |
agtttttggtggtgtaaccagtgttatta |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2101778 |
agtttttggtggtgtaaccagtgttatta |
2101806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 222 - 446
Target Start/End: Original strand, 2102059 - 2102306
Alignment:
| Q |
222 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggagttgcccgtcatgtttaactc-taaggtttat--- |
317 |
Q |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggcgttgcccatcatgtttaactcctaaggtttatatc |
2102158 |
T |
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| Q |
318 |
------------------ctatgaagtaa-cataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
398 |
Q |
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| T |
2102159 |
atgataactctattttatctatgaagtaaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
2102258 |
T |
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| Q |
399 |
tctggtgccggagctgttctccgttctgcagatgggagtcgggtgaat |
446 |
Q |
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| T |
2102259 |
tctggtgctggagctgttcttcgttctgcagatgggagtcgggtgaat |
2102306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 438
Target Start/End: Original strand, 2106201 - 2106297
Alignment:
| Q |
342 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
438 |
Q |
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| T |
2106201 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2106297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 438
Target Start/End: Original strand, 2097714 - 2097810
Alignment:
| Q |
342 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
438 |
Q |
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| T |
2097714 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2097810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 2041741 - 2041794
Alignment:
| Q |
342 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctgga |
395 |
Q |
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| T |
2041741 |
ttgcagagttcttgtatccttcaatttgatggtgcgtcaagtggaaatcctgga |
2041794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 336 - 489
Target Start/End: Complemental strand, 39183883 - 39183730
Alignment:
| Q |
336 |
aaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatggga |
435 |
Q |
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| T |
39183883 |
aaaatcttgcagcgttcttgtatcctagaatttgatggagcatccagtggaaatcctggaaggtctggtgcaggagctgttctgcgttctgcagatggga |
39183784 |
T |
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| Q |
436 |
gtcgggtgaatactctatccatcaaatcatttttgcattatacaatatatcaaa |
489 |
Q |
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| T |
39183783 |
gtcgggtgaatactctatccatcaaatcatttttgcactatacaatatgtcaaa |
39183730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39184998 - 39184928
Alignment:
| Q |
1 |
cttttaaaaaagttttgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatat |
71 |
Q |
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| T |
39184998 |
cttttaaaagagttttgttttgtaattttcacgttttcaagagcttatagtttatatttaccggcttatat |
39184928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
87 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
131 |
Q |
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| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
188 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
227 |
Q |
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| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 39183970 - 39183930
Alignment:
| Q |
267 |
attgatatcctctataaggagttgcccgtcatgtttaactc |
307 |
Q |
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| T |
39183970 |
attgatatcctctataaggtgttgcccgtcgtatttaactc |
39183930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 4952228 - 4952169
Alignment:
| Q |
313 |
tttatctatgaagtaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatg |
372 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4952228 |
tttatttatgagataacataaacaaaatcttgcagcgttcttgtatccttgaatttgatg |
4952169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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