View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13680_high_4 (Length: 428)

Name: NF13680_high_4
Description: NF13680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13680_high_4
NF13680_high_4
[»] chr5 (23 HSPs)
chr5 (30-408)||(28080547-28080925)
chr5 (30-214)||(28080804-28080988)
chr5 (56-210)||(28080871-28081025)
chr5 (56-114)||(27930000-27930058)
chr5 (56-114)||(27930408-27930466)
chr5 (56-114)||(27930612-27930670)
chr5 (56-114)||(28081171-28081229)
chr5 (56-114)||(28081375-28081433)
chr5 (56-114)||(28081579-28081637)
chr5 (56-114)||(28081783-28081841)
chr5 (56-114)||(27930816-27930874)
chr5 (65-119)||(27931029-27931083)
chr5 (123-182)||(27931024-27931083)
chr5 (119-177)||(27930000-27930058)
chr5 (119-177)||(27930204-27930262)
chr5 (119-177)||(27930408-27930466)
chr5 (119-177)||(27930612-27930670)
chr5 (119-177)||(28081171-28081229)
chr5 (119-177)||(28081375-28081433)
chr5 (119-177)||(28081579-28081637)
chr5 (119-177)||(28081783-28081841)
chr5 (56-114)||(27930204-27930262)
chr5 (119-177)||(27930816-27930874)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 408
Target Start/End: Complemental strand, 28080925 - 28080547
Alignment:
Q  30 catctaatcatttgttcaacagttcaagacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgcca 129  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080925 catctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgcca 28080826  T
Q  130 accttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatcgttacttcatatgaatgat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28080825 accttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccgatcttttgaccagcgatcgttacttcatatgaatgat 28080726  T
Q  230 tctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatttgtatccacacttat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080725 tctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatttgtatccacacttat 28080626  T
Q  330 cctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080625 cctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 28080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 28080988 - 28080804
Alignment:
Q  30 catctaatcatttgttcaacagttcaagacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgcca 129  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  28080988 catctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgcca 28080889  T
Q  130 accttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatcgtta 214  Q
    | ||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||    
T  28080888 atcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaaccttttgaacagcaatcgtta 28080804  T

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Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 28081025 - 28080871
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaaccttttgaacagcaatcgttatcat 155  Q
    |||||| | ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||| ||| |||||||    
T  28081025 agacattgccaatcttttgaactgcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatcattatcat 28080926  T
Q  156 catctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28080925 catctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080871  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27930000 - 27930058
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930000 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27930408 - 27930466
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930408 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27930612 - 27930670
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930612 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 28081229 - 28081171
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081229 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 28081433 - 28081375
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081433 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 28081637 - 28081579
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081637 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 28081841 - 28081783
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081841 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27930816 - 27930874
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  27930816 agacattgtcaatcttttgaccaacgatcattatcatcatctaatcatttgttcaacag 27930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 27931029 - 27931083
Alignment:
Q  65 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaa 119  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  27931029 caatcttttgaccaacgatcattatcatcatctaatcatttgttcaacagttcaa 27931083  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 27931024 - 27931083
Alignment:
Q  123 attgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaa 182  Q
    |||||||| ||||||| || | ||| ||||||||||||||||||||||||||||||||||    
T  27931024 attgccaatcttttgaccaacgatcattatcatcatctaatcatttgttcaacagttcaa 27931083  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27930000 - 27930058
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930000 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27930204 - 27930262
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||| |||||||| ||||    
T  27930204 agacattgccaatcttttgaccagcaatcattatcatcatctaattatttgttcgacag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27930408 - 27930466
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930408 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27930612 - 27930670
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930612 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28081229 - 28081171
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081229 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28081433 - 28081375
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081433 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28081637 - 28081579
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081637 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28081841 - 28081783
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081841 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27930204 - 27930262
Alignment:
Q  56 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 114  Q
    |||||| | |||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  27930204 agacattgccaatcttttgaccagcaatcattatcatcatctaattatttgttcgacag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27930816 - 27930874
Alignment:
Q  119 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 177  Q
    |||||||| ||| ||||||| || | ||| |||||||||||||||||||||||||||||    
T  27930816 agacattgtcaatcttttgaccaacgatcattatcatcatctaatcatttgttcaacag 27930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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