View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13680_high_5 (Length: 389)
Name: NF13680_high_5
Description: NF13680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13680_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 40803985 - 40804344
Alignment:
| Q |
1 |
tcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtgaagacatcaatatttaatnnn |
100 |
Q |
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| T |
40803985 |
tcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtgaatacatcaatatttaataaa |
40804084 |
T |
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| Q |
101 |
nnnnnnnntgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcatatggtcttgatataacatgaaa |
200 |
Q |
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| T |
40804085 |
aaaaaa--tgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcatatggtcttgatataacatgaaa |
40804182 |
T |
|
| Q |
201 |
tgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttgttttatttattttccattgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804183 |
tgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttgttttatttattttccattgac |
40804282 |
T |
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| Q |
301 |
ataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaatgat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804283 |
ataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaatgat |
40804344 |
T |
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