View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13680_high_7 (Length: 328)
Name: NF13680_high_7
Description: NF13680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13680_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 148 - 319
Target Start/End: Complemental strand, 26833367 - 26833196
Alignment:
| Q |
148 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
247 |
Q |
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| T |
26833367 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
26833268 |
T |
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| Q |
248 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaa |
319 |
Q |
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| T |
26833267 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaa |
26833196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 26786570 - 26786432
Alignment:
| Q |
157 |
atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgat |
256 |
Q |
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| T |
26786570 |
atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat |
26786471 |
T |
|
| Q |
257 |
tcaactgatcctacaattaaggtatctatgctacaaaac |
295 |
Q |
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| T |
26786470 |
tcaactgacccaacaatcaaggtatatatgctacaaaac |
26786432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 26823436 - 26823309
Alignment:
| Q |
164 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
263 |
Q |
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| T |
26823436 |
ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26823337 |
T |
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| Q |
264 |
atcctacaattaaggtatctatgctaca |
291 |
Q |
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| T |
26823336 |
acccaacaatcaaggtatacatgctaca |
26823309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
| Q |
164 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
263 |
Q |
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| T |
26799345 |
ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26799246 |
T |
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| Q |
264 |
atcctacaattaaggtat |
281 |
Q |
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| || || || ||||||| |
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| T |
26799245 |
acccaaccatcaaggtat |
26799228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 26833485 - 26833438
Alignment:
| Q |
30 |
accctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
77 |
Q |
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| T |
26833485 |
accctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
26833438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 26799467 - 26799425
Alignment:
| Q |
35 |
atggttcttgttcaagttccaatgtataatgaaagagaggtga |
77 |
Q |
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| T |
26799467 |
atggttcttgttcaagttccaatgtacaatgaaagagaggtga |
26799425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
| Q |
177 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc |
267 |
Q |
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| T |
41545969 |
aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc |
41546059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 26786696 - 26786649
Alignment:
| Q |
30 |
accctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
77 |
Q |
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| T |
26786696 |
accctattgttcttgttcaaatcccaatgtacaatgaaagagaggtga |
26786649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
177 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
276 |
Q |
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|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
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| Q |
277 |
ggta |
280 |
Q |
| |
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|||| |
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| T |
41917092 |
ggta |
41917095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 2021636 - 2021679
Alignment:
| Q |
32 |
cctatggttcttgttcaagttccaatgtataatgaaagagaggt |
75 |
Q |
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| T |
2021636 |
cctatggttcttgttcagattccaatgtgtaatgaaagagaggt |
2021679 |
T |
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