View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13681_high_1 (Length: 512)
Name: NF13681_high_1
Description: NF13681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13681_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 41238238 - 41237751
Alignment:
| Q |
18 |
ataaataatctcactatgccacttccaattatgcgaattcgaatgcccgtactatactactcttcttactctgccatcttcacaacccgatatggcgtgg |
117 |
Q |
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| T |
41238238 |
ataaataatctcactatgccacttccaattatgcgaattcgaatgcccgtactacactactcttcttactctgccatcttcacaacccgatatggcgtgg |
41238139 |
T |
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| Q |
118 |
ctctgccatttttgcaccaaccaagtttcacttatgtatcccactctcctcactctcaaccac---tgctcaccaagccacctttggcgaatcccgacga |
214 |
Q |
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| T |
41238138 |
ctctgccatttttgcaccaaccaagtttcacttatgtttcccactcttctcactctcaaccacagttgctcaccaagccacctttggcgaatcccgacga |
41238039 |
T |
|
| Q |
215 |
taaaggagtatgtatttacattgcatccaacctttcctttttctcatctcaattctttatataaattcttattgtcaattagtgccaatgtttcttttcc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41238038 |
taaaggagtatgtatttacattgcatccaacctttcccttttctcatctcaattctttatataaattcttattgtcaattagtgccaatgtttcttttcc |
41237939 |
T |
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| Q |
315 |
agtacttaagaaatgccagaacgttggacgaatcacttcttcacttcaacgaacttgacccgtctttgaaaagttcacgaatttgcaaccatttattggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41237938 |
agtacttaagaaatgccagaacgttggacgaatcacttcttcacttcaaccaacttgacccgtctttgaaaagttcacgaatttgcaaccatttattggt |
41237839 |
T |
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| Q |
415 |
gggtttgctcaaatccggtcgtattgatgatgcccgccaggtgcttgaccaattgcttcaaccggataccggatttcctcctgatgat |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41237838 |
gggtttgctcaaatccggtcgtattgatgatgcccgccaggtgcttgaccaattgcttcaaccggataccggatttcctcctgatgat |
41237751 |
T |
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