View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13681_low_2 (Length: 502)
Name: NF13681_low_2
Description: NF13681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13681_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 46504257 - 46503935
Alignment:
| Q |
19 |
tgaagagcattaacaaatctacggtgcaagtctggtgaccaacaccttcttgctttcctatgagtttggtttgaattattgcttgttgtctgagtttgtg |
118 |
Q |
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| T |
46504257 |
tgaagagcattaacaaatctacggtgcaagtctggtgaccaacaccttcttgctttcctatgagtttggtttgaattattgcttgttgtctgagtttgtg |
46504158 |
T |
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| Q |
119 |
atgatgctactggacttccttttccttgattatcagcttcattccctgaatttgttttccctttttctgcttctccaacatgtttcttatcctcttcttt |
218 |
Q |
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| T |
46504157 |
atgatgctactggacttccttttccttgattatcaacttcattccctgaatttgttttccctttttctgcttctccaacatgtttcttatcctcttcttt |
46504058 |
T |
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| Q |
219 |
ttgagtagaagctagtgctagttcaggaagaccctgaccttgacaagatgagttatttctttcttttgagaatgggagaaaagctccaccatttctatgt |
318 |
Q |
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| T |
46504057 |
ttgagtagaagctagtgctagttcaggaagaccctgaccttgacaagatgagttatttctttcttttgagaatgggagaaaagctccaccatttctatgt |
46503958 |
T |
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| Q |
319 |
ttaggactaatgttaaatccaat |
341 |
Q |
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| T |
46503957 |
ttaggactaatgttaaatccaat |
46503935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 46503865 - 46503782
Alignment:
| Q |
411 |
gctccataattgtgcacttgtcatccaatttgccatatcacatacatta-tatttgttgtcttttccaatgtttctgatgatgt |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46503865 |
gctccataattgtgcacttgtcatccaatttgccatatcacatacattattatttgttgtcttttccaatgtttctgatgatgt |
46503782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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