View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13682_high_1 (Length: 562)
Name: NF13682_high_1
Description: NF13682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13682_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Original strand, 8457750 - 8458276
Alignment:
| Q |
20 |
atctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457750 |
atctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaa |
8457849 |
T |
|
| Q |
120 |
tactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8457850 |
tactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagataaccat |
8457949 |
T |
|
| Q |
220 |
agacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8457950 |
agacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacgaagggaattctccaggtacccaacattttgtcct |
8458049 |
T |
|
| Q |
320 |
aagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgctagtcaataagttaatttctttgtacaaactttgatgcgc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8458050 |
aagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgctagtcaataagttaatttctttgtacaaactttgatacgc |
8458149 |
T |
|
| Q |
420 |
atgcagtctcatgtatatcaggtattgaattcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctca |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8458150 |
atgcagtttcatgtatatcaggtattgaattcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctca |
8458249 |
T |
|
| Q |
520 |
agggaagccacctggtgtgattggatg |
546 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
8458250 |
agggaagccacctggtgtgattggatg |
8458276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 6827587 - 6827278
Alignment:
| Q |
20 |
atctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaa |
119 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |
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|
| T |
6827587 |
atctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggtat---gcttaaaattctcattcatgaaataaatgaa |
6827491 |
T |
|
| Q |
120 |
tactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcat |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||| |
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|
| T |
6827490 |
tactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccat |
6827391 |
T |
|
| Q |
220 |
agacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcct |
319 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
6827390 |
aggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcct |
6827291 |
T |
|
| Q |
320 |
aagtatgttaaat |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6827290 |
aagtatgttaaat |
6827278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 434 - 546
Target Start/End: Complemental strand, 6827279 - 6827166
Alignment:
| Q |
434 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
532 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
|
| Q |
533 |
ggtgtgattggatg |
546 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6827179 |
ggtgtgattggatg |
6827166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 9822557 - 9822866
Alignment:
| Q |
20 |
atctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaa |
119 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
9822557 |
atctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggtat---gcttaaaattctcattcatgaaataaatgaa |
9822653 |
T |
|
| Q |
120 |
tactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcat |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
9822654 |
tactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccat |
9822753 |
T |
|
| Q |
220 |
agacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcct |
319 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
9822754 |
aggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcct |
9822853 |
T |
|
| Q |
320 |
aagtatgttaaat |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9822854 |
aagtatgttaaat |
9822866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 434 - 546
Target Start/End: Original strand, 9822865 - 9822978
Alignment:
| Q |
434 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
532 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
|
| Q |
533 |
ggtgtgattggatg |
546 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9822965 |
ggtgtgattggatg |
9822978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 27964230 - 27964065
Alignment:
| Q |
20 |
atctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaa |
119 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
27964230 |
atctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggtat---gcttaaaattctcattcatgaa-taaatgaa |
27964135 |
T |
|
| Q |
120 |
tactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctc |
189 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
27964134 |
tactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctc |
27964065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 27964043 - 27963980
Alignment:
| Q |
483 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg |
546 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg |
27963980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 439 - 546
Target Start/End: Complemental strand, 25802704 - 25802596
Alignment:
| Q |
439 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
537 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
|
| Q |
538 |
gattggatg |
546 |
Q |
| |
|
||||||||| |
|
|
| T |
25802604 |
gattggatg |
25802596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 446 - 542
Target Start/End: Complemental strand, 18361263 - 18361166
Alignment:
| Q |
446 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg |
542 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg |
18361166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
| Q |
253 |
ggacagctttcaactgcatttgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa |
331 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
18361345 |
ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
108 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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