View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13682_high_2 (Length: 518)
Name: NF13682_high_2
Description: NF13682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13682_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 53 - 499
Target Start/End: Original strand, 51124221 - 51124654
Alignment:
| Q |
53 |
gatcctttcacccaatagtttggatatgaattgatggtccaactatcttttagcataagatatgatcacgaggtcaaatttaactttaaaaatgtatcga |
152 |
Q |
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| T |
51124221 |
gatcctttcatccaagagtttggatatgaattgatgatccaactatcttttagcataagatgtgatcacgagttcaaattcaactttaaaaatgtatcga |
51124320 |
T |
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| Q |
153 |
ttagtctaaacaattgtccattataattctattcagattgagtaattatatttgcacgaaaatggatccattcatgcttctctctcatgtttcaaatcac |
252 |
Q |
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| T |
51124321 |
ttagtctaaacaattgtccattgtaattctatacagattgagtaattatatttgcacgaaaatggatccattcat-------------gtttcaaatcac |
51124407 |
T |
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| Q |
253 |
caacctttatccatatttatttattttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
352 |
Q |
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| T |
51124408 |
caacctttatccatatttattttttttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
51124507 |
T |
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| Q |
353 |
caactcaatccaatgccaataatgttggaaaacttagatagtataaatgaggttctagtttgattcaacnnnnnnnncaataatgctggacttgtgctgt |
452 |
Q |
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| T |
51124508 |
caactcaatccaatgccaataatgttggaagacttagatagtataaatgaggttctagtttgattcaacaaaaaaaacaataatgctggaattgtgctgt |
51124607 |
T |
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| Q |
453 |
actttaaattcaattgaatagcaataattgattgccccactcgagtg |
499 |
Q |
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| T |
51124608 |
acttaaaattcaattgaatagcaataattgattgccccactcgagtg |
51124654 |
T |
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