View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13682_high_3 (Length: 441)
Name: NF13682_high_3
Description: NF13682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13682_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 47330978 - 47330680
Alignment:
| Q |
21 |
gtaacatgcatgaatggggtgtttggggttcgaactttgtccttacatataacaatgtaatatccttgccgactgagctatgctcatgaacgaannnnnn |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47330978 |
gtaacatgcatgaatggggtgtttgaggtttaaactttgtccttacatataacaatgtaatatccttgccgactgagctatgctcatggacgaatttttt |
47330879 |
T |
|
| Q |
121 |
natgtcatcatagttgaaaaagacgtttgtaatatataaaactaattgaactacccatcaaaaaataaactaattgaaccattgttttttgaatgaaact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47330878 |
tatgtcatcatagttgaaaaagacgtttgtaatatataaaactaattgaactacccatcaaaaaataaactaattgaaccattgttttttgaatgaaact |
47330779 |
T |
|
| Q |
221 |
aattgttgaaaaaacttgtggtaaacagataaatggtgaatagatttttaaacttttggaactaattaaatcatttgttaaggtaatcgaaattagtggc |
320 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47330778 |
aattgttg-agaaacttgtggtaaacagataaatggtgaatagatttttaaacttttggaactaattaaaccatttgttaaggtaatcgaaattagtggc |
47330680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University