View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13682_high_5 (Length: 327)

Name: NF13682_high_5
Description: NF13682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13682_high_5
NF13682_high_5
[»] chr2 (1 HSPs)
chr2 (19-308)||(42448502-42448795)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 42448795 - 42448502
Alignment:
Q  19 cacagatgtatactagttaagcctgtccggctgacccgtttaagtttatttttacttatttctttgctagacaaataatatctgggtttattttaatggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448795 cacagatgtatactagttaagcctgtccggctgacccgtttaagtttatttttacttatttctttgctagacaaataatatctgggtttattttaatggt 42448696  T
Q  119 gaatttgtttactgttagaga----aacctaacctattgtgagattatgttgaatttaacattactctattttttgacattctctcaatatatatatggt 214  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42448695 gaatttgtttactgttagagatcgaaacctaacctattgtgagattatgttgaatttaacattactctattttttgacatcctctcaatatatatatggt 42448596  T
Q  215 gttaagtttttgttttgaaaaaacaaaattttattaaactgcaccaaaaccattcaatattgatgcaatagtatcataacaaaagagttctagt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448595 gttaagtttttgttttgaaaaaacaaaattttattaaactgcaccaaaaccattcaatattgatgcaatagtatcataacaaaagagttctagt 42448502  T

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